The oral microbiome: diversity, biogeography and human health

JL Baker, JL Mark Welch, KM Kauffman… - Nature Reviews …, 2024 - nature.com
The human oral microbiota is highly diverse and has a complex ecology, comprising
bacteria, microeukaryotes, archaea and viruses. These communities have elaborate and …

Microbial signatures of health, gingivitis, and periodontitis

L Abusleme, A Hoare, BY Hong, PI Diaz - Periodontology 2000, 2021 - Wiley Online Library
The subgingival crevice harbors diverse microbial communities. Shifts in the composition of
these communities occur with the development of gingivitis and periodontitis, which are …

The vaginal microbiome and preterm birth

JM Fettweis, MG Serrano, JP Brooks, DJ Edwards… - Nature medicine, 2019 - nature.com
The incidence of preterm birth exceeds 10% worldwide. There are significant disparities in
the frequency of preterm birth among populations within countries, and women of African …

Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing

CM Singleton, F Petriglieri, JM Kristensen… - Nature …, 2021 - nature.com
Microorganisms play crucial roles in water recycling, pollution removal and resource
recovery in the wastewater industry. The structure of these microbial communities is …

Extensive unexplored human microbiome diversity revealed by over 150,000 genomes from metagenomes spanning age, geography, and lifestyle

E Pasolli, F Asnicar, S Manara, M Zolfo, N Karcher… - Cell, 2019 - cell.com
The body-wide human microbiome plays a role in health, but its full diversity remains
uncharacterized, particularly outside of the gut and in international populations. We …

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

M Wang, JJ Carver, VV Phelan, LM Sanchez… - Nature …, 2016 - nature.com
The potential of the diverse chemistries present in natural products (NP) for biotechnology
and medicine remains untapped because NP databases are not searchable with raw data …

Major new microbial groups expand diversity and alter our understanding of the tree of life

CJ Castelle, JF Banfield - Cell, 2018 - cell.com
The recent recovery of genomes for organisms from phyla with no isolated representative
(candidate phyla) via cultivation-independent genomics enabled delineation of major new …

[HTML][HTML] A new view of the tree of life

LA Hug, BJ Baker, K Anantharaman, CT Brown… - Nature …, 2016 - nature.com
The tree of life is one of the most important organizing principles in biology 1. Gene surveys
suggest the existence of an enormous number of branches 2, but even an approximation of …

Composition and function of chicken gut microbiota

I Rychlik - Animals, 2020 - mdpi.com
Simple Summary Chickens evolved for millions of years to be hatched in a nest in contact
with an adult hen. However, current commercial production of chickens is based on hatching …

Resilience of the oral microbiome

WG Wade - Periodontology 2000, 2021 - Wiley Online Library
The human mouth harbors a complex microbiota, the composition of which is potentially
influenced by a wide range of factors, including the intake of food and drink, the availability …