Performance and application of 16S rRNA gene cycle sequencing for routine identification of bacteria in the clinical microbiology laboratory

DL Church, L Cerutti, A Gürtler, T Griener… - Clinical microbiology …, 2020 - Am Soc Microbiol
This review provides a state-of-the-art description of the performance of Sanger cycle
sequencing of the 16S rRNA gene for routine identification of bacteria in the clinical …

Whole-genome sequencing of bacterial pathogens: the future of nosocomial outbreak analysis

S Quainoo, JPM Coolen, SAFT van Hijum… - Clinical microbiology …, 2017 - Am Soc Microbiol
Outbreaks of multidrug-resistant bacteria present a frequent threat to vulnerable patient
populations in hospitals around the world. Intensive care unit (ICU) patients are particularly …

[PDF][PDF] Global anaemia reduction efforts among women of reproductive age: impact, achievement of targets and the way forward for optimizing efforts

World Health Organization - 2020 - apps.who.int
Anaemia is a global public health concern, afflicting adolescent girls, women of reproductive
age, pregnant women and children in low-and middle-income countries. 1 Reduction of …

The use of next generation sequencing for improving food safety: Translation into practice

B Jagadeesan, P Gerner-Smidt, MW Allard, S Leuillet… - Food …, 2019 - Elsevier
Abstract Next Generation Sequencing (NGS) combined with powerful bioinformatic
approaches are revolutionising food microbiology. Whole genome sequencing (WGS) of …

Developmental roadmap for antimicrobial susceptibility testing systems

A van Belkum, TT Bachmann, G Lüdke… - Nature Reviews …, 2019 - nature.com
Antimicrobial susceptibility testing (AST) technologies help to accelerate the initiation of
targeted antimicrobial therapy for patients with infections and could potentially extend the …

Interpreting whole-genome sequence analyses of foodborne bacteria for regulatory applications and outbreak investigations

AW Pightling, JB Pettengill, Y Luo, JD Baugher… - Frontiers in …, 2018 - frontiersin.org
Whole-genome sequence (WGS) analysis has revolutionized the food safety industry by
enabling high-resolution typing of foodborne bacteria. Higher resolving power allows …

[HTML][HTML] Practical issues in implementing whole-genome-sequencing in routine diagnostic microbiology

JWA Rossen, AW Friedrich, J Moran-Gilad - Clinical microbiology and …, 2018 - Elsevier
Background Next generation sequencing (NGS) is increasingly being used in clinical
microbiology. Like every new technology adopted in microbiology, the integration of NGS …

Integrating whole-genome sequencing data into quantitative risk assessment of foodborne antimicrobial resistance: a review of opportunities and challenges

L Collineau, P Boerlin, CA Carson… - Frontiers in …, 2019 - frontiersin.org
Whole-genome sequencing (WGS) will soon replace traditional phenotypic methods for
routine testing of foodborne antimicrobial resistance (AMR). WGS is expected to improve …

[HTML][HTML] The future of NGS (Next Generation Sequencing) analysis in testing food authenticity

E Haynes, E Jimenez, MA Pardo, SJ Helyar - Food control, 2019 - Elsevier
The authenticity of foodstuffs is an important issue for consumers, regulators, producers and
processors, as fraudulent practices can negatively affect consumer confidence and safety …

Assuring the quality of next-generation sequencing in clinical microbiology and public health laboratories

AS Gargis, L Kalman, IM Lubin - Journal of Clinical Microbiology, 2016 - Am Soc Microbiol
Clinical microbiology and public health laboratories are beginning to utilize next-generation
sequencing (NGS) for a range of applications. This technology has the potential to transform …