[HTML][HTML] Integrative plasma proteomic and microRNA analysis of Jersey cattle in response to high-altitude hypoxia

Z Kong, C Zhou, B Li, J Jiao, L Chen, A Ren, H Jie… - Journal of dairy …, 2019 - Elsevier
Blood has been widely collected and analyzed for diagnosing and monitoring diseases in
humans and animals; a range of plasma proteins and peptide can be used as biomarkers to …

A proteomics approach to identifying key protein targets involved in VEGF inhibitor mediated attenuation of bleomycin‐induced pulmonary fibrosis

YM Kulkarni, S Dutta, AKV Iyer, R Venkatadri… - …, 2016 - Wiley Online Library
Idiopathic pulmonary fibrosis (IPF) is a progressive lung disease with a life expectancy of
less than 5 years post diagnosis for most patients. Poor molecular characterization of IPF …

Integrative proteomic and microRNA analysis of the priming phase during rat liver regeneration

X Geng, C Chang, X Zang, J Sun, P Li, J Guo, C Xu - Gene, 2016 - Elsevier
The partial hepatectomy (PH) model provides an effective medium for study of liver
regeneration (LR). Considering that LR is regulated by microRNAs (miRNAs), investigation …

Salivary protein profiles among HER2/neu‐receptor‐positive and‐negative breast cancer patients: support for using salivary protein profiles for modeling breast …

CF Streckfus, D Arreola, C Edwards… - Journal of …, 2012 - Wiley Online Library
Purpose. The objective of this study was to compare the salivary protein profiles from
individuals diagnosed with breast cancer that were either HER2/neu receptor positive or …

Inferring alterations in cell‐to‐cell communication in HER2+ breast cancer using secretome profiling of three cell models

DJ Klinke, YM Kulkarni, Y Wu… - Biotechnology and …, 2014 - Wiley Online Library
Challenges in demonstrating durable clinical responses to molecular‐targeted therapies
have sparked a re‐emergence in viewing cancer as an evolutionary process. In somatic …

A Catalogue of Altered Salivary Proteins Secondary to Invasive Ductal Carcinoma: A Novel In Vivo Paradigm to Assess Breast Cancer Progression

CF Streckfus, L Bigler - Scientific Reports, 2016 - nature.com
The objective of this manuscript is to introduce a catalogue of salivary proteins that are
altered secondary to carcinoma of the breast. The catalogue of salivary proteins is a …

iTRAQ-based quantitative proteomic analysis of the initiation of head regeneration in planarians

X Geng, G Wang, Y Qin, X Zang, P Li, Z Geng, D Xue… - PLoS …, 2015 - journals.plos.org
The planarian Dugesia japonica has amazing ability to regenerate a head from the anterior
ends of the amputated stump with maintenance of the original anterior-posterior polarity …

A quantitative systems approach to identify paracrine mechanisms that locally suppress immune response to Interleukin-12 in the B16 melanoma model

YM Kulkarni, E Chambers, AJR McGray… - Integrative …, 2012 - academic.oup.com
Abstract Interleukin-12 (IL12) enhances anti-tumor immunity when delivered to the tumor
microenvironment. However, local immunoregulatory elements dampen the efficacy of IL12 …

Association of Enolase-1 with prognosis and immune infiltration in breast cancer by clinical stage

YY Shi, XL Chen, QX Chen, YZ Yang… - Journal of …, 2023 - Taylor & Francis
Purpose Enolase-1 (ENO1) plays a key role in malignancies. Previous studies on the
association between ENO1 expression and breast cancer prognosis had yielded …

Applying of hierarchical clustering to analysis of protein patterns in the human cancer-associated liver

NA Petushkova, MA Pyatnitskiy, VA Rudenko… - PLoS …, 2014 - journals.plos.org
Background There are two ways that statistical methods can learn from biomedical data.
One way is to learn classifiers to identify diseases and to predict outcomes using the training …