How quantitative is metabarcoding: A meta‐analytical approach

PD Lamb, E Hunter, JK Pinnegar, S Creer… - Molecular …, 2019 - Wiley Online Library
Metabarcoding has been used in a range of ecological applications such as taxonomic
assignment, dietary analysis and the analysis of environmental DNA. However, after a …

Quartet RNA reference materials improve the quality of transcriptomic data through ratio-based profiling

Y Yu, W Hou, Y Liu, H Wang, L Dong, Y Mai… - Nature …, 2024 - nature.com
Certified RNA reference materials are indispensable for assessing the reliability of RNA
sequencing to detect intrinsically small biological differences in clinical settings, such as …

Mitochondrial complex I activity in microglia sustains neuroinflammation

L Peruzzotti-Jametti, CM Willis, G Krzak, R Hamel… - Nature, 2024 - nature.com
Sustained smouldering, or low-grade activation, of myeloid cells is a common hallmark of
several chronic neurological diseases, including multiple sclerosis. Distinct metabolic and …

[HTML][HTML] Robustness of differential gene expression analysis of RNA-seq

A Stupnikov, CE McInerney, KI Savage… - Computational and …, 2021 - Elsevier
Abstract RNA-sequencing (RNA-seq) is a relatively new technology that lacks
standardisation. RNA-seq can be used for Differential Gene Expression (DGE) analysis …

Bacterial peptidoglycan fragments differentially regulate innate immune signaling

KL Bersch, KE DeMeester, R Zagani, S Chen… - ACS central …, 2021 - ACS Publications
The human innate immune system responds to both pathogen and commensal bacteria at
the molecular level using bacterial peptidoglycan (PG) recognition elements. Traditionally …

[HTML][HTML] Myeloid cell interferon secretion restricts Zika flavivirus infection of developing and malignant human neural progenitor cells

H Bulstrode, GC Girdler, T Gracia, A Aivazidis… - Neuron, 2022 - cell.com
Zika virus (ZIKV) can infect human developing brain (HDB) progenitors resulting in epidemic
microcephaly, whereas analogous cellular tropism offers treatment potential for the adult …

Transcriptomic studies in mouse models of Rett syndrome: a review

A Sanfeliu, WE Kaufmann, M Gill, P Guasoni, D Tropea - Neuroscience, 2019 - Elsevier
Rett Syndrome (RTT) is a neurological disorder mainly associated with mutations in the X-
linked gene coding for the methyl-CpG binding protein 2 (MECP2). To assist in studying …

Proinflammatory cytokines driving cardiotoxicity in COVID-19

M Colzani, J Bargehr, F Mescia… - Cardiovascular …, 2024 - academic.oup.com
Aims Cardiac involvement is common in patients hospitalized with COVID-19 and correlates
with an adverse disease trajectory. While cardiac injury has been attributed to direct viral …

The UEA sRNA Workbench (version 4.4): a comprehensive suite of tools for analyzing miRNAs and sRNAs

MB Stocks, I Mohorianu, M Beckers, C Paicu… - …, 2018 - academic.oup.com
Motivation RNA interference, a highly conserved regulatory mechanism, is mediated via
small RNAs (sRNA). Recent technical advances enabled the analysis of larger, complex …

Defining housekeeping genes suitable for RNA-seq analysis of the human allograft kidney biopsy tissue

Z Wang, Z Lyu, L Pan, G Zeng, P Randhawa - BMC medical genomics, 2019 - Springer
Background RNA-seq is poised to play a major role in the management of kidney transplant
patients. Rigorous definition of housekeeping genes (HKG) is essential for further progress …