[HTML][HTML] Integrating phylogenies into single-cell RNA sequencing analysis allows comparisons across species, genes, and cells
Comparisons of single-cell RNA sequencing (scRNA-seq) data across species can reveal
links between cellular gene expression and the evolution of cell functions, features, and …
links between cellular gene expression and the evolution of cell functions, features, and …
Acquisition of polymorphism in the chordate doliolids
CJ Pickett, J Ryan, B Davidson - Integrative and Comparative …, 2024 - academic.oup.com
In polymorphic organisms a single genome is deployed to program numerous,
morphologically distinct body plans within a colony. This complex life history trait has …
morphologically distinct body plans within a colony. This complex life history trait has …
A macroevolutionary analysis of European Late Upper Palaeolithic stone tool shape using a Bayesian phylodynamic framework
Phylogenetic models are commonly used in palaeobiology to study the patterns and
processes of organismal evolution. In the human sciences, phylogenetic methods have …
processes of organismal evolution. In the human sciences, phylogenetic methods have …
The evolution of developmental biology through conceptual and technological revolutions
P Liberali, AF Schier - Cell, 2024 - cell.com
Developmental biology—the study of the processes by which cells, tissues, and organisms
develop and change over time—has entered a new golden age. After the molecular genetics …
develop and change over time—has entered a new golden age. After the molecular genetics …
Exploring the unknown: how can we improve single-cell RNAseq cell type annotations in non-model organisms?
KH Wong, NA Rodriguez… - Integrative and …, 2024 - academic.oup.com
Single-cell RNA sequencing (scRNAseq) is a powerful tool to describe cell types in
multicellular organisms across the animal kingdom. In standard scRNAseq analysis …
multicellular organisms across the animal kingdom. In standard scRNAseq analysis …
Computational modeling of aging-related gene networks: a review
JANLF Freitas, O Bischof - Frontiers in Applied Mathematics and …, 2024 - frontiersin.org
The aging process is a complex and multifaceted phenomenon affecting all living
organisms. It involves a gradual deterioration of tissue and cellular function, leading to a …
organisms. It involves a gradual deterioration of tissue and cellular function, leading to a …
Insights into the molecular bases of multicellular development from brown algae
The transition from simple to complex multicellularity represents a major evolutionary step
that occurred in only a few eukaryotic lineages. Comparative analyses of these lineages …
that occurred in only a few eukaryotic lineages. Comparative analyses of these lineages …
[HTML][HTML] Algorithms for the Reconstruction of Genomic Structures with Proofs of Their Low Polynomial Complexity and High Exactness
K Gorbunov, V Lyubetsky - Mathematics, 2024 - mdpi.com
The mathematical side of applied problems in multiple subject areas (biology, pattern
recognition, etc.) is reduced to the problem of discrete optimization in the following …
recognition, etc.) is reduced to the problem of discrete optimization in the following …
Online t-SNE for single-cell RNA-seq
H Ma, K Chen - arXiv preprint arXiv:2406.14842, 2024 - arxiv.org
Due to the sequential sample arrival, changing experiment conditions, and evolution of
knowledge, the demand to continually visualize evolving structures of sequential and …
knowledge, the demand to continually visualize evolving structures of sequential and …