Strong adsorption of DNA molecules on humic acids

K Saeki, Y Ihyo, M Sakai, T Kunito - Environmental chemistry letters, 2011 - Springer
Analysing soil microbial communities is often hampered by DNA adsorption on soil organic
compounds such as humic acids. However the role of humic acids in DNA adsorption and …

A quantitative analysis of DNA extraction and purification from compost

M Howeler, WC Ghiorse, LP Walker - Journal of Microbiological Methods, 2003 - Elsevier
We quantified both DNA and humic acid concentrations during the extraction and
purification of DNA from compost. The DNA extraction method consisted of bead-beating …

In pursuit of sensitivity: Lessons learned from viral nucleic acid detection and quantification on the Raindance ddPCR platform

S Long - Methods, 2022 - Elsevier
Sensitive PCR detection of viral nucleic acids plays a critical role in infectious disease
research, diagnosis and monitoring. In the context of SARS-CoV-2 detection, recent reports …

Determination of free DNA in soils

J Niemeyer, F Gessler - Journal of Plant Nutrition and Soil …, 2002 - Wiley Online Library
The concentration of free DNA in soils has to be determined in order to understand the fate
and the transport of extracellular DNA. A protocol for the extraction and determination of free …

Bacterial community analysis of activated sludge: an evaluation of four commonly used DNA extraction methods

L Vanysacker, SAJ Declerck, B Hellemans… - Applied Microbiology …, 2010 - Springer
The effectiveness of three commercially available direct DNA isolation kits (Mobio, Fast,
Qiagen) and one published direct DNA extraction protocol (Bead) for extracting bacterial …

Development and evaluation of a TaqMan duplex real-time PCR quantification method for reliable enumeration of Candidatus Microthrix

L Vanysacker, C Denis, J Roels, K Verhaeghe… - Journal of …, 2014 - Elsevier
Candidatus Microtrhix parvicella is one of the most common filamentous bacteria reported to
be involved in bulking and foaming problems in activated sludge plants worldwide. In order …

Soil properties affecting adsorption of plasmid DNA and its transformation efficiency in Escherichia coli

T Kunito, Y Ihyo, H Miyahara, R Seta, S Yoshida… - Biology and fertility of …, 2016 - Springer
We examined the soil properties affecting adsorption of plasmid DNA and its transformation
efficiency using competent Escherichia coli cells in sterile forested Andosols (n= 2), arable …

Analysis of microbial community structures and functions in heavy metal-contaminated soils using molecular methods

F Gremion - 2003 - infoscience.epfl.ch
The contamination of agricultural land and groundwater by heavy metals is essentially
linked to human activities. A major problem with heavy metals is that they cannot be …

The extraction of fungal DNA from multiple large soil samples

RD Reeleder, BB Capell, LD Tomlinson… - Canadian Journal of …, 2003 - Taylor & Francis
A commercial electric paint shaker was utilized to enable the simultaneous extraction of
DNA from multiple large soil samples. A bead homogenization procedure was used to …

Measurement of nitrate-nitrogen concentration in soil based on absorption spectroscopy

MJ Preiner, NC Koshnick, JS White… - US Patent …, 2013 - Google Patents
The nitrate-nitrogen concentration in soil is estimated based on the nitrate-nitrogen 200 nm
absorption peak. In one embodiment, a device measures the attenuation spectrum of a soil …