Combining machine learning and computational chemistry for predictive insights into chemical systems

JA Keith, V Vassilev-Galindo, B Cheng… - Chemical …, 2021 - ACS Publications
Machine learning models are poised to make a transformative impact on chemical sciences
by dramatically accelerating computational algorithms and amplifying insights available from …

QSAR without borders

EN Muratov, J Bajorath, RP Sheridan… - Chemical Society …, 2020 - pubs.rsc.org
Prediction of chemical bioactivity and physical properties has been one of the most
important applications of statistical and more recently, machine learning and artificial …

Decoupling the depth and scope of graph neural networks

H Zeng, M Zhang, Y Xia, A Srivastava… - Advances in …, 2021 - proceedings.neurips.cc
State-of-the-art Graph Neural Networks (GNNs) have limited scalability with respect to the
graph and model sizes. On large graphs, increasing the model depth often means …

Automated exploration of the low-energy chemical space with fast quantum chemical methods

P Pracht, F Bohle, S Grimme - Physical Chemistry Chemical Physics, 2020 - pubs.rsc.org
We propose and discuss an efficient scheme for the in silico sampling for parts of the
molecular chemical space by semiempirical tight-binding methods combined with a meta …

Machine learning methods in drug discovery

L Patel, T Shukla, X Huang, DW Ussery, S Wang - Molecules, 2020 - mdpi.com
The advancements of information technology and related processing techniques have
created a fertile base for progress in many scientific fields and industries. In the fields of drug …

Artificial intelligence in drug discovery: recent advances and future perspectives

J Jiménez-Luna, F Grisoni, N Weskamp… - Expert opinion on drug …, 2021 - Taylor & Francis
Introduction: Artificial intelligence (AI) has inspired computer-aided drug discovery. The
widespread adoption of machine learning, in particular deep learning, in multiple scientific …

Concepts of artificial intelligence for computer-assisted drug discovery

X Yang, Y Wang, R Byrne, G Schneider… - Chemical …, 2019 - ACS Publications
Artificial intelligence (AI), and, in particular, deep learning as a subcategory of AI, provides
opportunities for the discovery and development of innovative drugs. Various machine …

Artificial intelligence in chemistry: current trends and future directions

ZJ Baum, X Yu, PY Ayala, Y Zhao… - Journal of Chemical …, 2021 - ACS Publications
The application of artificial intelligence (AI) to chemistry has grown tremendously in recent
years. In this Review, we studied the growth and distribution of AI-related chemistry …

Interpretation of machine learning models using shapley values: application to compound potency and multi-target activity predictions

R Rodríguez-Pérez, J Bajorath - Journal of computer-aided molecular …, 2020 - Springer
Difficulties in interpreting machine learning (ML) models and their predictions limit the
practical applicability of and confidence in ML in pharmaceutical research. There is a need …

Machine learning for chemical reactivity: the importance of failed experiments

F Strieth‐Kalthoff, F Sandfort… - Angewandte Chemie …, 2022 - Wiley Online Library
Assessing the outcomes of chemical reactions in a quantitative fashion has been a
cornerstone across all synthetic disciplines. Classically approached through empirical …