Evolving SAXS versatility: solution X-ray scattering for macromolecular architecture, functional landscapes, and integrative structural biology

CA Brosey, JA Tainer - Current opinion in structural biology, 2019 - Elsevier
Highlights•SAXS captures architecture and dynamics to elucidate molecular
ensembles.•SAXS advances now probe key thermodynamic and kinetic properties of …

Molecular crowding: the history and development of a scientific paradigm

C Alfano, Y Fichou, K Huber, M Weiss, E Spruijt… - Chemical …, 2024 - ACS Publications
It is now generally accepted that macromolecules do not act in isolation but “live” in a
crowded environment, that is, an environment populated by numerous different molecules …

RNA: The Unsuspected Conductor in the Orchestra of Macromolecular Crowding

E Zacco, L Broglia, M Kurihara, M Monti… - Chemical …, 2024 - ACS Publications
This comprehensive Review delves into the chemical principles governing RNA-mediated
crowding events, commonly referred to as granules or biological condensates. We explore …

Molecular crowders can induce collapse in hydrophilic polymers via soft attractive interactions

D Nayar - The Journal of Physical Chemistry B, 2023 - ACS Publications
A comprehensive understanding of protein folding and biomolecular self-assembly in the
intracellular environment requires obtaining a microscopic view of the crowding effects. The …

Functional roles of chelated magnesium ions in RNA folding and function

R Yamagami, JP Sieg, PC Bevilacqua - Biochemistry, 2021 - ACS Publications
RNA regulates myriad cellular events such as transcription, translation, and splicing. To
perform these essential functions, RNA often folds into complex tertiary structures in which …

Divalent cations can control a switch-like behavior in heterotypic and homotypic RNA coacervates

PL Onuchic, AN Milin, I Alshareedah, AA Deniz… - Scientific reports, 2019 - nature.com
Liquid-liquid phase separation (LLPS) of RNA-protein complexes plays a major role in the
cellular function of membraneless organelles (MLOs). MLOs are sensitive to changes in …

Impact of macromolecular crowding on RNA/spermine complex coacervation and oligonucleotide compartmentalization

AM Marianelli, BM Miller, CD Keating - Soft Matter, 2018 - pubs.rsc.org
We report the effect of neutral macromolecular crowders poly (ethylene glycol)(PEG)(8 kDa)
and Ficoll (70 kDa) on liquid–liquid phase separation in a polyuridylic acid (polyU)/spermine …

Encapsulation of ribozymes inside model protocells leads to faster evolutionary adaptation

YC Lai, Z Liu, IA Chen - Proceedings of the National …, 2021 - National Acad Sciences
Functional biomolecules, such as RNA, encapsulated inside a protocellular membrane are
believed to have comprised a very early, critical stage in the evolution of life, since …

Effects of molecular crowders on single-molecule nucleic acid folding: temperature-dependent studies reveal true crowding vs enthalpic interactions

HL Sung, DJ Nesbitt - The Journal of Physical Chemistry B, 2021 - ACS Publications
Biomolecular folding in cells can be strongly influenced by spatial overlap/excluded volume
interactions (ie,“crowding”) with intracellular solutes. As a result, traditional in vitro …

Statistical modeling of RNA structure profiling experiments enables parsimonious reconstruction of structure landscapes

H Li, S Aviran - Nature Communications, 2018 - nature.com
RNA plays key regulatory roles in diverse cellular processes, where its functionality often
derives from folding into and converting between structures. Many RNAs further rely on co …