The maternal-to-zygotic transition revisited

NL Vastenhouw, WX Cao, HD Lipshitz - Development, 2019 - journals.biologists.com
The development of animal embryos is initially directed by maternal gene products. Then,
during the maternal-to-zygotic transition (MZT), developmental control is handed to the …

The small peptide world in long noncoding RNAs

SW Choi, HW Kim, JW Nam - Briefings in bioinformatics, 2019 - academic.oup.com
Long noncoding RNAs (lncRNAs) are a group of transcripts that are longer than 200
nucleotides (nt) without coding potential. Over the past decade, tens of thousands of novel …

Direct observation of translational activation by a ribonucleoprotein granule

R Chen, W Stainier, J Dufourt, M Lagha… - Nature Cell …, 2024 - nature.com
Biomolecular condensates organize biochemical processes at the subcellular level and can
provide spatiotemporal regulation within a cell. Among these, ribonucleoprotein (RNP) …

Translation and natural selection of micropeptides from long non-canonical RNAs

P Patraquim, EG Magny, JI Pueyo, AI Platero… - Nature …, 2022 - nature.com
Long noncoding RNAs (lncRNAs) are transcripts longer than 200 nucleotides but lacking
canonical coding sequences. Apparently unable to produce peptides, lncRNA function …

Classification and function of small open reading frames

JP Couso, P Patraquim - Nature reviews Molecular cell biology, 2017 - nature.com
Small open reading frames (smORFs) of 100 codons or fewer are usually—if arbitrarily—
excluded from proteome annotations. Despite this, the genomes of many metazoans …

Emerging evidence for functional peptides encoded by short open reading frames

SJ Andrews, JA Rothnagel - Nature Reviews Genetics, 2014 - nature.com
Short open reading frames (sORFs) are a common feature of all genomes, but their coding
potential has mostly been disregarded, partly because of the difficulty in determining …

Coding or noncoding, the converging concepts of RNAs

J Li, C Liu - Frontiers in genetics, 2019 - frontiersin.org
Technological advances over the past decade have unraveled the remarkable complexity of
RNA. The identification of small peptides encoded by long non-coding RNAs (lncRNAs) as …

c-Myc regulates transcriptional pause release

PB Rahl, CY Lin, AC Seila, RA Flynn, S McCuine… - Cell, 2010 - cell.com
Recruitment of the RNA polymerase II (Pol II) transcription initiation apparatus to promoters
by specific DNA-binding transcription factors is well recognized as a key regulatory step in …

The RNA polymerase II carboxy-terminal domain (CTD) code

D Eick, M Geyer - Chemical reviews, 2013 - ACS Publications
The smallest viable unit of life is the cell. From bacteria to mammals, all cells use the same
nucleic acid-based universal code for the maintenance and inheritance of genetic …

Extensive translation of small open reading frames revealed by Poly-Ribo-Seq

JL Aspden, YC Eyre-Walker, RJ Phillips, U Amin… - elife, 2014 - elifesciences.org
Thousands of small Open Reading Frames (smORFs) with the potential to encode small
peptides of fewer than 100 amino acids exist in our genomes. However, the number of …