Fragmentation methods: A route to accurate calculations on large systems

MS Gordon, DG Fedorov, SR Pruitt… - Chemical …, 2012 - ACS Publications
Theoretical chemists have always strived to perform quantum mechanics (QM) calculations
on larger and larger molecules and molecular systems, as well as condensed phase …

Electron-correlated fragment-molecular-orbital calculations for biomolecular and nano systems

S Tanaka, Y Mochizuki, Y Komeiji, Y Okiyama… - Physical Chemistry …, 2014 - pubs.rsc.org
Recent developments in the fragment molecular orbital (FMO) method for theoretical
formulation, implementation, and application to nano and biomolecular systems are …

Exploring chemistry with the fragment molecular orbital method

DG Fedorov, T Nagata, K Kitaura - Physical Chemistry Chemical …, 2012 - pubs.rsc.org
The fragment molecular orbital (FMO) method makes possible nearly linear scaling
calculations of large molecular systems, such as water clusters, proteins and DNA. In …

Extending the power of quantum chemistry to large systems with the fragment molecular orbital method

DG Fedorov, K Kitaura - The Journal of Physical Chemistry A, 2007 - ACS Publications
Following the brief review of the modern fragment-based methods and other approaches to
perform quantum-mechanical calculations of large systems, the theoretical development of …

Double-hybrid density functional theory for excited electronic states of molecules

S Grimme, F Neese - The Journal of chemical physics, 2007 - pubs.aip.org
Double-hybrid density functionals are based on a mixing of standard generalized gradient
approximations (GGAs) for exchange and correlation with Hartree-Fock (HF) exchange and …

[图书][B] The fragment molecular orbital method: practical applications to large molecular systems

D Fedorov, K Kitaura - 2009 - books.google.com
Answering the need to facilitate quantum-chemical calculations of systems with thousands of
atoms, Kazuo Kitaura and his coworkers developed the Fragment Molecular Orbital (FMO) …

Accurate methods for large molecular systems

MS Gordon, JM Mullin, SR Pruitt… - The Journal of …, 2009 - ACS Publications
Three exciting new methods that address the accurate prediction of processes and
properties of large molecular systems are discussed. The systematic fragmentation method …

Fully analytic energy gradient in the fragment molecular orbital method

T Nagata, K Brorsen, DG Fedorov, K Kitaura… - The Journal of …, 2011 - pubs.aip.org
The Z-vector equations are derived and implemented for solving the response term due to
the external electrostatic potentials, and the corresponding contribution is added to the …

Subsystem‐based theoretical spectroscopy of biomolecules and biomolecular assemblies

J Neugebauer - ChemPhysChem, 2009 - Wiley Online Library
The absorption properties of chromophores in biomolecular systems are subject to several
fine‐tuning mechanisms. Specific interactions with the surrounding protein environment …

Time-dependent density functional theory based upon the fragment molecular orbital method

M Chiba, DG Fedorov, K Kitaura - The Journal of chemical physics, 2007 - pubs.aip.org
Time-dependent density functional theory (TDDFT) was combined with the two-body
fragment molecular orbital method (FMO2). In this FMO2-TDDFT scheme, the system is …