Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use

JF Atkins, G Loughran, PR Bhatt, AE Firth… - Nucleic acids …, 2016 - academic.oup.com
Genetic decoding is not 'frozen'as was earlier thought, but dynamic. One facet of this is
frameshifting that often results in synthesis of a C-terminal region encoded by a new frame …

A gripping tale of ribosomal frameshifting: extragenic suppressors of frameshift mutations spotlight P-site realignment

JF Atkins, GR Bjork - Microbiology and molecular biology reviews, 2009 - Am Soc Microbiol
Mutants of translation components which compensate for both− 1 and+ 1 frameshift
mutations showed the first evidence for framing malleability. Those compensatory mutants …

Coupling of mRNA structure rearrangement to ribosome movement during bypassing of non-coding regions

J Chen, A Coakley, M O'Connor, A Petrov, SE O'Leary… - Cell, 2015 - cell.com
Nearly half of the ribosomes translating a particular bacteriophage T4 mRNA bypass a
region of 50 nt, resuming translation 3′ of this gap. How this large-scale, specific hop …

Kinetics of programmed and spontaneous ribosome sliding along the mRNA

T Senyushkina, E Samatova, M Klimova… - Nucleic Acids …, 2024 - academic.oup.com
The ribosome can slide along mRNA without establishing codon-anticodon interactions.
This movement can be regulated (programmed) by the elements encoded in the mRNA, as …

Streptomyces rare codon UUA: from features associated with 2 adpA related locations to candidate phage regulatory translational bypassing

IV Antonov, S O'Loughlin, AN Gorohovski… - RNA biology, 2023 - Taylor & Francis
In Streptomyces species, the cell cycle involves a switch from an early and vegetative state
to a later phase where secondary products including antibiotics are synthesized, aerial …

Evolution of+ 1 programmed frameshifting signals and frameshift-regulating tRNAs in the order Saccharomycetales

PJ Farabaugh, E Kramer, H Vallabhaneni… - Journal of molecular …, 2006 - Springer
Programmed translational frameshifting is a ubiquitous but rare mechanism of gene
expression in which mRNA sequences cause the translational machinery to shift reading …

An RNA sequence that reprograms ribosomes to bypass a 50 nucleotide coding gap is encoded by a mobile element whose sequence conservation illuminates its …

G Manning, JF Atkins - bioRxiv, 2022 - biorxiv.org
Background A remarkable sequence in phage T4 causes ribosomes to skip over a 50
nucleotide insert within a topoisomerase subunit gene, and resume correct synthesis of the …

[HTML][HTML] Polysomes bypass a 50-nucleotide coding gap less efficiently than monosomes due to attenuation of a 5′ mRNA stem–loop and enhanced drop-off

S O'Loughlin, MC Capece, M Klimova, NM Wills… - Journal of molecular …, 2020 - Elsevier
Efficient translational bypassing of a 50-nt non-coding gap in a phage T4 topoisomerase
subunit gene (gp60) requires several recoding signals. Here we investigate the function of …

Translational bypassing–peptidyl-tRNA re-pairing at non-overlapping sites

NM Wills - Recoding: Expansion of Decoding Rules Enriches …, 2010 - Springer
Ribosomal bypassing can lead to the translational fusion of non-contiguous ORFs. It
involves dissociation of codon: anticodon pairing in the ribosomal P-site followed by mRNA …

The tri-frame model

E Pienaar, HJ Viljoen - Journal of theoretical biology, 2008 - Elsevier
The tri-frame model gives mathematical expression to the transcription and translation
processes, and considers all three reading frames (RFs). RNA polymerases transcribe DNA …