Robust nucleus/cell detection and segmentation in digital pathology and microscopy images: a comprehensive review

F Xing, L Yang - IEEE reviews in biomedical engineering, 2016 - ieeexplore.ieee.org
Digital pathology and microscopy image analysis is widely used for comprehensive studies
of cell morphology or tissue structure. Manual assessment is labor intensive and prone to …

Nucleus segmentation: towards automated solutions

R Hollandi, N Moshkov, L Paavolainen, E Tasnadi… - Trends in Cell …, 2022 - cell.com
Single nucleus segmentation is a frequent challenge of microscopy image processing, since
it is the first step of many quantitative data analysis pipelines. The quality of tracking single …

[HTML][HTML] Computerized cell tracking: Current methods, tools and challenges

N Emami, Z Sedaei, R Ferdousi - Visual Informatics, 2021 - Elsevier
In developmental biology, knowledge of cell structure and their (morpho) dynamic behavior,
leads to a comprehensive understanding of their conducts and the mechanisms in which …

Cell segmentation-free inference of cell types from in situ transcriptomics data

J Park, W Choi, S Tiesmeyer, B Long, LE Borm… - Nature …, 2021 - nature.com
Multiplexed fluorescence in situ hybridization techniques have enabled cell-type
identification, linking transcriptional heterogeneity with spatial heterogeneity of cells …

An encoding technique for CNN-based network anomaly detection

T Kim, SC Suh, H Kim, J Kim… - 2018 IEEE International …, 2018 - ieeexplore.ieee.org
An important challenge in the cyber-space is the effective identification of network
anomalies, often caused by malicious activities. With the remarkable advances, machine …

Saliency and ballness driven deep learning framework for cell segmentation in bright field microscopic images

SB Asha, G Gopakumar… - Engineering Applications of …, 2023 - Elsevier
Cell segmentation is the most significant task in microscopic image analysis as it facilitates
differential cell counting and analysis of sub-cellular structures for diagnosing …

Automatic improvement of deep learning-based cell segmentation in time-lapse microscopy by neural architecture search

Y Zhu, E Meijering - Bioinformatics, 2021 - academic.oup.com
Motivation Live cell segmentation is a crucial step in biological image analysis and is also a
challenging task because time-lapse microscopy cell sequences usually exhibit complex …

LimeSeg: a coarse-grained lipid membrane simulation for 3D image segmentation

S Machado, V Mercier, N Chiaruttini - BMC bioinformatics, 2019 - Springer
Background 3D segmentation is often a prerequisite for 3D object display and quantitative
measurements. Yet existing voxel-based methods do not directly give information on the …

Versatile framework for medical image processing and analysis with application to automatic bone age assessment

C Zhao, J Han, Y Jia, L Fan… - Journal of Electrical and …, 2018 - Wiley Online Library
Deep learning technique has made a tremendous impact on medical image processing and
analysis. Typically, the procedure of medical image processing and analysis via deep …

A review of biological image analysis

W Chen, W Li, X Dong, J Pei - Current Bioinformatics, 2018 - ingentaconnect.com
Background: In recent years, there is an increasing number of researchers applying
bioimaging techniques to generate a myriad of biological images. The growing image data …