Phytoplankton in the Tara Ocean

JJ Pierella Karlusich, FM Ibarbalz… - Annual Review of …, 2020 - annualreviews.org
Photosynthesis evolved in the ocean more than 2 billion years ago and is now performed by
a wide range of evolutionarily distinct organisms, including both prokaryotes and …

Linking metagenomics to aquatic microbial ecology and biogeochemical cycles

HP Grossart, R Massana, KD McMahon… - Limnology and …, 2020 - Wiley Online Library
Microbial communities are essential components of aquatic ecosystems through their
contribution to food web dynamics and biogeochemical processes. Aquatic microbial …

A Genus Definition for Bacteria and Archaea Based on a Standard Genome Relatedness Index

RA Barco, GM Garrity, JJ Scott, JP Amend, KH Nealson… - MBio, 2020 - Am Soc Microbiol
Genus assignment is fundamental in the characterization of microbes, yet there is currently
no unambiguous way to demarcate genera solely using standard genomic relatedness …

Metagenomic analysis reveals global-scale patterns of ocean nutrient limitation

LJ Ustick, AA Larkin, CA Garcia, NS Garcia, ML Brock… - Science, 2021 - science.org
Nutrient supply regulates the activity of phytoplankton, but the global biogeography of
nutrient limitation and co-limitation is poorly understood. Prochlorococcus adapt to local …

Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

TO Delmont, M Gaia, DD Hinsinger, P Fremont… - Cell Genomics, 2022 - cell.com
Marine planktonic eukaryotes play critical roles in global biogeochemical cycles and climate.
However, their poor representation in culture collections limits our understanding of the …

Targeted isolation and cultivation of uncultivated bacteria by reverse genomics

KL Cross, JH Campbell, M Balachandran… - Nature …, 2019 - nature.com
Most microorganisms from all taxonomic levels are uncultured. Single-cell genomes and
metagenomes continue to increase the known diversity of Bacteria and Archaea; however …

Desulfurivibrio spp. mediate sulfur-oxidation coupled to Sb (V) reduction, a novel biogeochemical process

X Sun, T Kong, F Li, MM Häggblom, M Kolton… - The ISME …, 2022 - academic.oup.com
Antimony (Sb) contamination released from mine tailings represents a global threat to
natural ecosystems and human health. The geochemical conditions of Sb tailings, which are …

Co-diversification of an intestinal Mycoplasma and its salmonid host

JA Rasmussen, P Kiilerich, AS Madhun… - The ISME …, 2023 - academic.oup.com
Understanding the evolutionary relationships between a host and its intestinal resident
bacteria can transform how we understand adaptive phenotypic traits. The interplay between …

Global analysis of biosynthetic gene clusters reveals conserved and unique natural products in entomopathogenic nematode-symbiotic bacteria

YM Shi, M Hirschmann, YN Shi, S Ahmed… - Nature Chemistry, 2022 - nature.com
Microorganisms contribute to the biology and physiology of eukaryotic hosts and affect other
organisms through natural products. Xenorhabdus and Photorhabdus (XP) living in …

Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome

A Shaiber, AD Willis, TO Delmont, S Roux, LX Chen… - Genome biology, 2020 - Springer
Introduction Microbial residents of the human oral cavity have long been a major focus of
microbiology due to their influence on host health and intriguing patterns of site specificity …