Landmarks in the history of selective sweeps

M Panigrahi, D Rajawat, SS Nayak, K Ghildiyal… - Animal …, 2023 - Wiley Online Library
Half a century ago, a seminal article on the hitchhiking effect by Smith and Haigh
inaugurated the concept of the selection signature. Selective sweeps are characterised by …

Contrasting signatures of genomic divergence during sympatric speciation

AF Kautt, CF Kratochwil, A Nater… - Nature, 2020 - nature.com
The transition from 'well-marked varieties' of a single species into 'well-defined species'—
especially in the absence of geographic barriers to gene flow (sympatric speciation)—has …

[PDF][PDF] Versatile detection of diverse selective sweeps with flex-sweep

ME Lauterbur, K Munch, D Enard - Molecular Biology and …, 2023 - academic.oup.com
Understanding the impacts of selection pressures influencing modern-day genomic diversity
is a major goal of evolutionary genomics. In particular, the contribution of selective sweeps …

Detection and classification of hard and soft sweeps from unphased genotypes by multilocus genotype identity

AM Harris, NR Garud, M DeGiorgio - Genetics, 2018 - academic.oup.com
Positive natural selection can lead to a decrease in genomic diversity at the selected site
and at linked sites, producing a characteristic signature of elevated expected haplotype …

Identifying the favored mutation in a positive selective sweep

A Akbari, JJ Vitti, A Iranmehr, M Bakhtiari, PC Sabeti… - Nature …, 2018 - nature.com
Most approaches that capture signatures of selective sweeps in population genomics data
do not identify the specific mutation favored by selection. We present iSAFE (for “integrated …

New insights into the genetic basis of Monge's disease and adaptation to high-altitude

T Stobdan, A Akbari, P Azad, D Zhou… - Molecular biology …, 2017 - academic.oup.com
Human high-altitude (HA) adaptation or mal-adaptation is explored to understand the
physiology, pathophysiology, and molecular mechanisms that underlie long-term exposure …

A novel approach utilizing domain adversarial neural networks for the detection and classification of selective sweeps

H Song, J Chu, W Li, X Li, L Fang, J Han… - Advanced …, 2024 - Wiley Online Library
The identification and classification of selective sweeps are of great significance for
improving the understanding of biological evolution and exploring opportunities for precision …

Selection on the gametophyte: Modeling alternation of generations in plants

ES Sorojsrisom, BC Haller, BA Ambrose… - Applications in Plant …, 2022 - Wiley Online Library
Premise The degree of gametophyte dependence on the sporophyte life stage is a major
feature that differentiates the life cycles of land plants, yet the evolutionary consequences of …

[HTML][HTML] Integration of population and functional genomics to understand mechanisms of artemisinin resistance in Plasmodium falciparum

J Oberstaller, L Zoungrana, CD Bannerman… - International Journal for …, 2021 - Elsevier
Resistance to antimalarial drugs, and in particular to the artemisinin derivatives and their
partner drugs, threatens recent progress toward regional malaria elimination and eventual …

Clear: Composition of Likelihoods for Evolve and Resequence Experiments

A Iranmehr, A Akbari, C Schlötterer, V Bafna - Genetics, 2017 - academic.oup.com
The advent of next generation sequencing technologies has made whole-genome and
whole-population sampling possible, even for eukaryotes with large genomes. With this …