The HDOCK server for integrated protein–protein docking
Abstract The HDOCK server (http://hdock. phys. hust. edu. cn/) is a highly integrated suite of
homology search, template-based modeling, structure prediction, macromolecular docking …
homology search, template-based modeling, structure prediction, macromolecular docking …
Deep transfer learning for inter-chain contact predictions of transmembrane protein complexes
Membrane proteins are encoded by approximately a quarter of human genes. Inter-chain
residue-residue contact information is important for structure prediction of membrane protein …
residue-residue contact information is important for structure prediction of membrane protein …
Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment
MF Lensink, G Brysbaert, T Mauri… - Proteins: Structure …, 2021 - Wiley Online Library
We present the results for CAPRI Round 50, the fourth joint CASP‐CAPRI protein assembly
prediction challenge. The Round comprised a total of twelve targets, including six dimers …
prediction challenge. The Round comprised a total of twelve targets, including six dimers …
Protein–protein contact prediction by geometric triangle-aware protein language models
Abstract Information regarding the residue–residue distance between interacting proteins is
important for modelling the structures of protein complexes, as well as being valuable for …
important for modelling the structures of protein complexes, as well as being valuable for …
Modeling and structure determination of homo-oligomeric proteins: An overview of challenges and current approaches
A Gaber, M Pavšič - International journal of molecular sciences, 2021 - mdpi.com
Protein homo-oligomerization is a very common phenomenon, and approximately half of
proteins form homo-oligomeric assemblies composed of identical subunits. The vast majority …
proteins form homo-oligomeric assemblies composed of identical subunits. The vast majority …
RAS nanoclusters: dynamic signaling platforms amenable to therapeutic intervention
RAS proteins are mutated in approximately 20% of all cancers and are generally associated
with poor clinical outcomes. RAS proteins are localized to the plasma membrane and …
with poor clinical outcomes. RAS proteins are localized to the plasma membrane and …
DeepHomo2. 0: improved protein–protein contact prediction of homodimers by transformer-enhanced deep learning
Protein–protein interactions play an important role in many biological processes. However,
although structure prediction for monomer proteins has achieved great progress with the …
although structure prediction for monomer proteins has achieved great progress with the …
Fast and versatile sequence-independent protein docking for nanomaterials design using RPXDock
Computationally designed multi-subunit assemblies have shown considerable promise for a
variety of applications, including a new generation of potent vaccines. One of the major …
variety of applications, including a new generation of potent vaccines. One of the major …
Accurate prediction of inter-protein residue–residue contacts for homo-oligomeric protein complexes
Protein–protein interactions play a fundamental role in all cellular processes. Therefore,
determining the structure of protein–protein complexes is crucial to understand their …
determining the structure of protein–protein complexes is crucial to understand their …
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment
MF Lensink, G Brysbaert, N Nadzirin… - Proteins: Structure …, 2019 - Wiley Online Library
We present the results for CAPRI Round 46, the third joint CASP‐CAPRI protein assembly
prediction challenge. The Round comprised a total of 20 targets including 14 homo …
prediction challenge. The Round comprised a total of 20 targets including 14 homo …