[HTML][HTML] SARS-CoV-2 variants, spike mutations and immune escape

WT Harvey, AM Carabelli, B Jackson… - Nature Reviews …, 2021 - nature.com
Although most mutations in the severe acute respiratory syndrome coronavirus 2 (SARS-
CoV-2) genome are expected to be either deleterious and swiftly purged or relatively …

[HTML][HTML] Toward a global virus genomic surveillance network

V Hill, G Githinji, CBF Vogels, AI Bento, C Chaguza… - Cell Host & Microbe, 2023 - cell.com
The COVID-19 pandemic galvanized the field of virus genomic surveillance, demonstrating
its utility for public health. Now, we must harness the momentum that led to increased …

Urbanization and humidity shape the intensity of influenza epidemics in US cities

BD Dalziel, S Kissler, JR Gog, C Viboud, ON Bjørnstad… - Science, 2018 - science.org
Influenza epidemics vary in intensity from year to year, driven by climatic conditions and by
viral antigenic evolution. However, important spatial variation remains unexplained. Here we …

Metagenomic nanopore sequencing of influenza virus direct from clinical respiratory samples

K Lewandowski, Y Xu, ST Pullan… - Journal of clinical …, 2019 - Am Soc Microbiol
Influenza is a major global public health threat as a result of its highly pathogenic variants,
large zoonotic reservoir, and pandemic potential. Metagenomic viral sequencing offers the …

Towards a universal influenza vaccine: different approaches for one goal

GA Sautto, GA Kirchenbaum, TM Ross - Virology journal, 2018 - Springer
Influenza virus infection is an ongoing health and economic burden causing epidemics with
pandemic potential, affecting 5–30% of the global population annually, and is responsible …

Population immunity predicts evolutionary trajectories of SARS-CoV-2

M Meijers, D Ruchnewitz, J Eberhardt, M Łuksza… - Cell, 2023 - cell.com
The large-scale evolution of the SARS-CoV-2 virus has been marked by rapid turnover of
genetic clades. New variants show intrinsic changes, notably increased transmissibility, and …

Steering and controlling evolution—from bioengineering to fighting pathogens

M Lässig, V Mustonen, A Nourmohammad - Nature Reviews Genetics, 2023 - nature.com
Control interventions steer the evolution of molecules, viruses, microorganisms or other cells
towards a desired outcome. Applications range from engineering biomolecules and …

Projecting the SARS-CoV-2 transition from pandemicity to endemicity: Epidemiological and immunological considerations

LE Cohen, DJ Spiro, C Viboud - PLoS Pathogens, 2022 - journals.plos.org
In this review, we discuss the epidemiological dynamics of different viral infections to project
how the transition from a pandemic to endemic Severe Acute Respiratory Syndrome …

The WHO global influenza surveillance and response system (GISRS)—a future perspective

AJ Hay, JW McCauley - Influenza and other respiratory viruses, 2018 - Wiley Online Library
In the centenary year of the devastating 1918‐19 pandemic, it seems opportune to reflect on
the success of the WHO Global Influenza Surveillance and Response System (GISRS) …

[HTML][HTML] Childhood immune imprinting to influenza A shapes birth year-specific risk during seasonal H1N1 and H3N2 epidemics

KM Gostic, R Bridge, S Brady, C Viboud… - PLoS …, 2019 - journals.plos.org
Across decades of co-circulation in humans, influenza A subtypes H1N1 and H3N2 have
caused seasonal epidemics characterized by different age distributions of cases and …