The number of scientific publications in the literature is steadily growing, containing our
knowledge in the biomedical, health, and clinical sciences. Since there is currently no …

Efficient access to chemical information contained in scientific literature, patents, technical
reports, or the web is a pressing need shared by researchers and patent attorneys from …

Highlights•No exhaustive experimental characterisation of an organism's metabolome
reported.•Deep metabolome annotation strategies based on multi-platform …

The automatic extraction of chemical information from text requires the recognition of
chemical entity mentions as one of its key steps. When developing supervised named entity …

Background Systems biology projects and omics technologies have led to a growing
number of biochemical pathway models and reconstructions. However, the majority of these …

Due to an enormous number of scientific publications that cannot be handled manually,
there is a rising interest in text-mining techniques for automated information extraction …

Highlights•We now have metabolic network models; the metabolome is represented by their
nodes.•Metabolite levels are sensitive to changes in enzyme activities.•Drugs hitchhike on …

Although the publication rate of the biomedical literature has been growing steadily during
the last decades, the accessibility of pertinent research publications for biologist and …

Highlights•Statistics has become a commodity and serves as entry into data interpretation.•
Metabolic pathway databases are incomplete and disagree on pathway …

The generation and use of metabolic network reconstructions has increased over recent
years. The development of such reconstructions has typically involved a time-consuming …