Therapeutic cancer vaccines: advancements, challenges, and prospects

T Fan, M Zhang, J Yang, Z Zhu, W Cao… - Signal Transduction and …, 2023 - nature.com
With the development and regulatory approval of immune checkpoint inhibitors and adoptive
cell therapies, cancer immunotherapy has undergone a profound transformation over the …

Next-generation TB vaccines: progress, challenges, and prospects

L Zhuang, Z Ye, L Li, L Yang, W Gong - Vaccines, 2023 - mdpi.com
Tuberculosis (TB), caused by Mycobacterium tuberculosis (MTB), is a prevalent global
infectious disease and a leading cause of mortality worldwide. Currently, the only available …

xTrimoPGLM: unified 100B-scale pre-trained transformer for deciphering the language of protein

B Chen, X Cheng, P Li, Y Geng, J Gong, S Li… - arXiv preprint arXiv …, 2024 - arxiv.org
Protein language models have shown remarkable success in learning biological information
from protein sequences. However, most existing models are limited by either autoencoding …

Quantitative approaches for decoding the specificity of the human T cell repertoire

ZS Ghoreyshi, JT George - Frontiers in Immunology, 2023 - frontiersin.org
T cell receptor (TCR)-peptide-major histocompatibility complex (pMHC) interactions play a
vital role in initiating immune responses against pathogens, and the specificity of TCRpMHC …

[HTML][HTML] Contrastive learning of T cell receptor representations

Y Nagano, AGT Pyo, M Milighetti, J Henderson… - Cell Systems, 2025 - cell.com
Computational prediction of the interaction of T cell receptors (TCRs) and their ligands is a
grand challenge in immunology. Despite advances in high-throughput assays, specificity …

Improvement in neoantigen prediction via integration of RNA sequencing data for variant calling

BQT Nguyen, TPD Tran, HT Nguyen… - Frontiers in …, 2023 - frontiersin.org
Introduction Neoantigen-based immunotherapy has emerged as a promising strategy for
improving the life expectancy of cancer patients. This therapeutic approach heavily relies on …

Neoantigen cancer vaccines: a new star on the horizon

X Li, J You, L Hong, W Liu, P Guo… - Cancer Biology & …, 2023 - pmc.ncbi.nlm.nih.gov
Immunotherapy represents a promising strategy for cancer treatment that utilizes immune
cells or drugs to activate the patient's own immune system and eliminate cancer cells. One of …

EPIC-TRACE: predicting TCR binding to unseen epitopes using attention and contextualized embeddings

D Korpela, E Jokinen, A Dumitrescu… - …, 2023 - academic.oup.com
Motivation T cells play an essential role in adaptive immune system to fight pathogens and
cancer but may also give rise to autoimmune diseases. The recognition of a peptide–MHC …

Strategies to Overcome Hurdles in Cancer Immunotherapy

J Kim, BJ Lee, S Moon, H Lee, J Lee, BS Kim… - Biomaterials …, 2024 - spj.science.org
Despite marked advancements in cancer immunotherapy over the past few decades, there
remains an urgent need to develop more effective treatments in humans. This review …

TCR-H: explainable machine learning prediction of T-cell receptor epitope binding on unseen datasets

ONA Demerdash, JC Smith - Frontiers in Immunology, 2024 - frontiersin.org
Artificial-intelligence and machine-learning (AI/ML) approaches to predicting T-cell receptor
(TCR)-epitope specificity achieve high performance metrics on test datasets which include …