Advances in structure elucidation of small molecules using mass spectrometry

T Kind, O Fiehn - Bioanalytical reviews, 2010 - Springer
The structural elucidation of small molecules using mass spectrometry plays an important
role in modern life sciences and bioanalytical approaches. This review covers different soft …

Mapping protein post-translational modifications with mass spectrometry

ES Witze, WM Old, KA Resing, NG Ahn - Nature methods, 2007 - nature.com
Post-translational modifications of proteins control many biological processes, and
examining their diversity is critical for understanding mechanisms of cell regulation. Mass …

Global quantification of mammalian gene expression control

B Schwanhäusser, D Busse, N Li, G Dittmar… - Nature, 2011 - nature.com
Gene expression is a multistep process that involves the transcription, translation and
turnover of messenger RNAs and proteins. Although it is one of the most fundamental …

Protein labeling by iTRAQ: a new tool for quantitative mass spectrometry in proteome research

S Wiese, KA Reidegeld, HE Meyer, B Warscheid - Proteomics, 2007 - Wiley Online Library
A novel, MS‐based approach for the relative quantification of proteins, relying on the
derivatization of primary amino groups in intact proteins using isobaric tag for relative and …

SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function

M Krüger, M Moser, S Ussar, I Thievessen, CA Luber… - Cell, 2008 - cell.com
Stable isotope labeling by amino acids in cell culture (SILAC) has become a versatile tool for
quantitative, mass spectrometry (MS)-based proteomics. Here, we completely label mice …

Systems-wide proteomic analysis in mammalian cells reveals conserved, functional protein turnover

SB Cambridge, F Gnad, C Nguyen… - Journal of proteome …, 2011 - ACS Publications
The turnover of each protein in the mammalian proteome is a functionally important
characteristic. Here, we employed high-resolution mass spectrometry to quantify protein …

Quantification of mRNA and protein and integration with protein turnover in a bacterium

T Maier, A Schmidt, M Güell, S Kühner… - Molecular systems …, 2011 - embopress.org
Biological function and cellular responses to environmental perturbations are regulated by a
complex interplay of DNA, RNA, proteins and metabolites inside cells. To understand these …

Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics

T Geiger, JR Wisniewski, J Cox, S Zanivan, M Kruger… - Nature protocols, 2011 - nature.com
Mass spectrometry (MS)-based proteomics is increasingly applied in a quantitative format,
often based on labeling of samples with stable isotopes that are introduced chemically or …

Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes

JM Pratt, DM Simpson, MK Doherty, J Rivers… - Nature protocols, 2006 - nature.com
An important area of proteomics involves the need for quantification, whether relative or
absolute. Many methods now exist for relative quantification, but to support biomarker …

Serum and plasma proteomics

HJ Issaq, Z Xiao, TD Veenstra - Chemical reviews, 2007 - ACS Publications
There is a saying,“Eyes are the windows to the soul”. In much the same vein, blood, since it
flows through the entire body, can be considered the window to the physical condition of the …