Drivers of microbiome biodiversity: a review of general rules, feces, and ignorance

AT Reese, RR Dunn - MBio, 2018 - Am Soc Microbiol
The alpha diversity of ecologic communities is affected by many biotic and abiotic drivers
and, in turn, affects ecosystem functioning. Yet, patterns of alpha diversity in host-associated …

Adverse outcome pathways for chronic copper toxicity to fish and amphibians

KV Brix, G De Boeck, S Baken… - … toxicology and chemistry, 2022 - Wiley Online Library
In the present review, we synthesize information on the mechanisms of chronic copper (Cu)
toxicity using an adverse outcome pathway framework and identify three primary pathways …

Host-genotype dependent gut microbiota drives zooplankton tolerance to toxic cyanobacteria

E Macke, M Callens, L De Meester… - Nature …, 2017 - nature.com
The gut microbiota impacts many aspects of its host's biology, and is increasingly
considered as a key factor mediating performance of host individuals in continuously …

Diet contributes to urban-induced alterations in gut microbiota: experimental evidence from a wild passerine

A Teyssier, E Matthysen, NS Hudin… - … of the Royal …, 2020 - royalsocietypublishing.org
Urban sprawl increasingly affects the ecology of natural populations, including host–
microbiota interactions, with observed differences in the gut microbiota between urban and …

[HTML][HTML] Animal gut microbiome mediates the effects of antibiotic pollution on an artificial freshwater system

W Zhu, D Yang, L Chang, M Zhang, L Zhu… - Journal of Hazardous …, 2022 - Elsevier
The antibiotic pollution has become an emerging environmental problem worldwide, but the
ecological outcomes remain to be elucidated, especially very little is known about the …

The amphibian microbiome exhibits poor resilience following pathogen-induced disturbance

AJ Jani, J Bushell, CG Arisdakessian… - The ISME …, 2021 - academic.oup.com
Infectious pathogens can disrupt the microbiome in addition to directly affecting the host.
Impacts of disease may be dependent on the ability of the microbiome to recover from such …

Diversity-stability dynamics of the amphibian skin microbiome and susceptibility to a lethal viral pathogen

XA Harrison, SJ Price, K Hopkins, WTM Leung… - Frontiers in …, 2019 - frontiersin.org
Variation among animals in their host-associated microbial communities is increasingly
recognized as a key determinant of important life history traits including growth, metabolism …

Manipulation of gut microbiota during critical developmental windows affects host physiological performance and disease susceptibility across ontogeny

RW Warne, L Kirschman, L Zeglin - Journal of Animal Ecology, 2019 - Wiley Online Library
Colonization of gut microbiomes during early life can shape metabolism and immunity of
adult animals. However, most data are derived from antibiotic‐treated or germ‐free …

Environmental factors and host microbiomes shape host–pathogen dynamics

AP Bernardo-Cravo, DS Schmeller, A Chatzinotas… - Trends in …, 2020 - cell.com
Microorganisms are increasingly recognized as ecosystem-relevant components because
they affect the population dynamics of hosts. Functioning at the interface of the host and …

Comparative analysis of microbial community structure and function in the gut of wild and captive Amur tiger

Y Ning, J Qi, MT Dobbins, X Liang, J Wang… - Frontiers in …, 2020 - frontiersin.org
It has been well acknowledged that the gut microbiome is important for host health,
composition changes in these microbial communities might increase susceptibility to …