[HTML][HTML] Analytical applications for pore-forming proteins

JJ Kasianowicz, AK Balijepalli, J Ettedgui… - … et Biophysica Acta (BBA …, 2016 - Elsevier
Proteinaceous nanometer-scale pores are ubiquitous in biology. The canonical ionic
channels (eg, those that transport Na+, K+, Ca 2+, and Cl− across cell membranes) play key …

Unzipping kinetics of duplex DNA containing oxidized lesions in an α-hemolysin nanopore

Q Jin, AM Fleming, CJ Burrows… - Journal of the American …, 2012 - ACS Publications
The unzipping kinetics for lesion-containing DNA duplexes was studied in an α-hemolysin (α-
HL) nanopore. The lesion of focus was the guanine two-electron oxidation product, 8-oxo-7 …

Rectification of the current in α-hemolysin pore depends on the cation type: the alkali series probed by molecular dynamics simulations and experiments

S Bhattacharya, J Muzard, L Payet… - The Journal of …, 2011 - ACS Publications
A striking feature of the α-hemolysin channel a prime candidate for biotechnological
applications is the dependence of its ionic conductance on the magnitude and direction of …

Interactions of the human telomere sequence with the nanocavity of the α-hemolysin ion channel reveal structure-dependent electrical signatures for hybrid folds

N An, AM Fleming, CJ Burrows - Journal of the American …, 2013 - ACS Publications
Human telomeric DNA consists of tandem repeats of the sequence 5′-TTAGGG-3′,
including a 3′ terminal single-stranded overhang of 100–200 nucleotides that can fold into …

Electrophoretic time-of-flight measurements of single DNA molecules with two stacked nanopores

M Langecker, D Pedone, FC Simmel, U Rant - Nano letters, 2011 - ACS Publications
Electrophoretic transport through a solid-state nanodevice comprised of two stacked
nanopore sensors is used to determine the free-solution mobility of DNA molecules based …

Electrical current signatures of DNA base modifications in single molecules immobilized in the α‐hemolysin ion channel

AH Wolna, AM Fleming, N An, L He… - Israel journal of …, 2013 - Wiley Online Library
Nanopore technology holds high potential for next‐generation DNA sequencing. This
method operates by drawing an individual single‐stranded DNA molecule through a …

Sequence-specific single-molecule analysis of 8-oxo-7, 8-dihydroguanine lesions in DNA based on unzipping kinetics of complementary probes in ion channel …

AEP Schibel, AM Fleming, Q Jin, N An… - Journal of the …, 2011 - ACS Publications
Translocation measurements of intact DNA strands with the ion channel α-hemolysin (α-HL)
are limited to single-stranded DNA (ssDNA) experiments as the dimensions of the channel …

Internal vs fishhook hairpin DNA: unzipping locations and mechanisms in the α-hemolysin nanopore

Y Ding, AM Fleming, HS White… - The Journal of Physical …, 2014 - ACS Publications
Studies on the interaction of hairpin DNA with the α-hemolysin (α-HL) nanopore have
determined hairpin unzipping kinetics, thermodynamics, and sequence-dependent …

DNA translocation and unzipping through a nanopore: some geometrical effects

J Muzard, M Martinho, J Mathé, U Bockelmann… - Biophysical journal, 2010 - cell.com
This article explores the role of some geometrical factors on the electrophoretically driven
translocations of macromolecules through nanopores. In the case of asymmetric pores, we …

Structural destabilization of DNA duplexes containing single-base lesions investigated by nanopore measurements

Q Jin, AM Fleming, Y Ding, CJ Burrows, HS White - Biochemistry, 2013 - ACS Publications
The influence of DNA duplex structural destabilization introduced by a single base-pair
modification was investigated by nanopore measurements. A series of 11 modified base …