RNA in cancer

GJ Goodall, VO Wickramasinghe - Nature Reviews Cancer, 2021 - nature.com
While the processing of mRNA is essential for gene expression, recent findings have
highlighted that RNA processing is systematically altered in cancer. Mutations in RNA …

[HTML][HTML] CLIP and complementary methods

M Hafner, M Katsantoni, T Köster, J Marks… - Nature Reviews …, 2021 - nature.com
RNA molecules start assembling into ribonucleoprotein (RNP) complexes during
transcription. Dynamic RNP assembly, largely directed by cis-acting elements on the RNA …

Alternative cleavage and polyadenylation in health and disease

AJ Gruber, M Zavolan - Nature Reviews Genetics, 2019 - nature.com
Most human genes have multiple sites at which RNA 3ʹ end cleavage and polyadenylation
can occur, enabling the expression of distinct transcript isoforms under different conditions …

m6A modification in RNA: biogenesis, functions and roles in gliomas

Y Zhang, X Geng, Q Li, J Xu, Y Tan, M Xiao… - Journal of Experimental …, 2020 - Springer
The chemical modification of RNA is a newly discovered epigenetic regulation mechanism
in cells and plays a crucial role in a variety of biological processes. N6-methyladenine (m6A) …

PolyASite 2.0: a consolidated atlas of polyadenylation sites from 3′ end sequencing

CJ Herrmann, R Schmidt, A Kanitz, P Artimo… - Nucleic acids …, 2020 - academic.oup.com
Generated by 3′ end cleavage and polyadenylation at alternative polyadenylation (poly
(A)) sites, alternative terminal exons account for much of the variation between human …

The emerging roles of RNA modifications in glioblastoma

Z Dong, H Cui - Cancers, 2020 - mdpi.com
Glioblastoma (GBM) is a grade IV glioma that is the most malignant brain tumor type.
Currently, there are no effective and sufficient therapeutic strategies for its treatment …

Alternative polyadenylation: methods, mechanism, function, and role in cancer

Y Zhang, L Liu, Q Qiu, Q Zhou, J Ding, Y Lu… - Journal of Experimental & …, 2021 - Springer
Occurring in over 60% of human genes, alternative polyadenylation (APA) results in
numerous transcripts with differing 3'ends, thus greatly expanding the diversity of mRNAs …

On the function and relevance of alternative 3′‐UTRs in gene expression regulation

I Pereira‐Castro, A Moreira - Wiley Interdisciplinary Reviews …, 2021 - Wiley Online Library
Messanger RNA (mRNA) isoforms with alternative 3′‐untranslated regions (3′‐UTRs) are
produced by alternative polyadenylation (APA), which occurs during transcription in most …

Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data

S Bryce-Smith, D Burri, MR Gazzara, CJ Herrmann… - RNA, 2023 - rnajournal.cshlp.org
The tremendous rate with which data is generated and analysis methods emerge makes it
increasingly difficult to keep track of their domain of applicability, assumptions, limitations …

The transcriptional terminator XRN2 and the RNA-binding protein Sam68 link alternative polyadenylation to cell cycle progression in prostate cancer

M Pieraccioli, C Caggiano, L Mignini, C Zhong… - Nature structural & …, 2022 - nature.com
Alternative polyadenylation (APA) yields transcripts differing in their 3′-end, and its
regulation is altered in cancer, including prostate cancer. Here we have uncovered a …