M Palkowski, W Bielecki - BMC bioinformatics, 2017 - Springer
Background RNA secondary structure prediction is a compute intensive task that lies at the core of several search algorithms in bioinformatics. Fortunately, the RNA folding …
D Wonnacott, T Jin, A Lake - 5th International Workshop …, 2015 - acohen.gitlabpages.inria.fr
Polyhedral compilation techniques have proven to be a powerful tool for optimization of dense array codes. In particular, their ability to tile imperfectly nested loops has provided …
M Palkowski, M Gruzewski - Electronics, 2024 - mdpi.com
Designing automatic optimizing compilers is an advanced engineering process requiring a great deal of expertise, programming, testing, and experimentation. Maintaining the …
M Palkowski, M Gruzewski - Electronics, 2023 - mdpi.com
In this article, we analyze the program codes generated automatically using three advanced optimizers: Pluto, Traco, and Dapt, which are specifically tailored for the NPDP benchmark …
M Palkowski, W Bielecki - Parallel Computing, 2023 - Elsevier
The paper presents a benchmark suite of ten non-serial polyadic dynamic programming (NPDP) kernels, which are designed to test the efficiency of tiled code generated by …
M Palkowski, W Bielecki - BMC bioinformatics, 2019 - Springer
Background An RNA primary structure, or sequence, is a single strand considered as a chain of nucleotides from the alphabet AUGC (adenine, uracil, guanine, cytosine). The …
M Palkowski, W Bielecki - BMC bioinformatics, 2018 - Springer
Background RNA folding is an ongoing compute-intensive task of bioinformatics. Parallelization and improving code locality for this kind of algorithms is one of the most …
W Bielecki, P Blaszynski, M Poliwoda - Journal of Computational Science, 2021 - Elsevier
This paper presents an approach to generation of 3D parallel tiled code implementing an optimal binary search tree (OBST) algorithm. We demonstrate that the features of data …
The two-volume set LNAI 12854 and 12855 constitutes the refereed proceedings of the 20th International Conference on Artificial Intelligence and Soft Computing, ICAISC 2021, held in …