GC content evolution in coding regions of angiosperm genomes: a unifying hypothesis

S Glémin, Y Clément, J David, A Ressayre - Trends in Genetics, 2014 - cell.com
In angiosperms (as in other species), GC content varies along and between genes, within a
genome, and between genomes of different species, but the reason for this distribution is still …

Comparative and phylogenetic analysis of complete chloroplast genomes from seven Neocinnamomum taxa (Lauraceae)

Z Cao, L Yang, Y Xin, W Xu, Q Li, H Zhang… - Frontiers in Plant …, 2023 - frontiersin.org
The genus Neocinnamomum is considered to be one of the most enigmatic groups in
Lauraceae, mainly distributed in tropical and subtropical regions of Southeast Asia. The …

Analysis of synonymous codon usage in Zea mays

H Liu, R He, H Zhang, Y Huang, M Tian… - Molecular Biology …, 2010 - Springer
It is important and meaningful to understand the codon usage pattern and the factors that
shape codon usage of maize. In this study, trends in synonymous codon usage in maize …

GC-Biased Gene Conversion and Selection Affect GC Content in the Oryza Genus (rice)

A Muyle, L Serres-Giardi, A Ressayre… - Molecular biology …, 2011 - academic.oup.com
Base composition varies among and within eukaryote genomes. Although mutational bias
and selection have initially been invoked, more recently GC-biased gene conversion …

Patterns and evolution of nucleotide landscapes in seed plants

L Serres-Giardi, K Belkhir, J David, S Glémin - The Plant Cell, 2012 - academic.oup.com
Nucleotide landscapes, which are the way base composition is distributed along a genome,
strongly vary among species. The underlying causes of these variations have been much …

Genomic organization of eukaryotic tRNAs

C Bermudez-Santana, CSO Attolini, T Kirsten… - BMC genomics, 2010 - Springer
Background Surprisingly little is known about the organization and distribution of tRNA
genes and tRNA-related sequences on a genome-wide scale. While tRNA gene …

Mutational Biases and GC-Biased Gene Conversion Affect GC Content in the Plastomes of Dendrobium Genus

Z Niu, Q Xue, H Wang, X Xie, S Zhu, W Liu… - International journal of …, 2017 - mdpi.com
The variation of GC content is a key genome feature because it is associated with
fundamental elements of genome organization. However, the reason for this variation is still …

Analysis of ribosome-associated mRNAs in rice reveals the importance of transcript size and GC content in translation

D Zhao, JP Hamilton, M Hardigan, D Yin… - G3: Genes …, 2017 - academic.oup.com
Gene expression is controlled at transcriptional and post-transcriptional levels including
decoding of messenger RNA (mRNA) into polypeptides via ribosome-mediated translation …

The variation of base composition in plant genomes

P Šmarda, P Bureš - Plant genome diversity volume 1: plant genomes …, 2012 - Springer
The proportions of the four nucleotides in DNA may vary significantly in various genome
components and with different selective forces or mutation biases acting on particular …

Analysis of synonymous codon usage patterns in the edible fungus Volvariella volvacea

W Jiang, B Lv, X Wu, J Wang, G Wu… - Biotechnology and …, 2017 - Wiley Online Library
In this study, trends in synonymous codons usage of Volvariella volvecea have been first
examined by analysis of complete coding sequences and gene chip data. The results …