[HTML][HTML] Chaos game representation and its applications in bioinformatics

HF Löchel, D Heider - Computational and structural biotechnology journal, 2021 - Elsevier
Chaos game representation (CGR), a milestone in graphical bioinformatics, has become a
powerful tool regarding alignment-free sequence comparison and feature encoding for …

Genomic signature: characterization and classification of species assessed by chaos game representation of sequences.

PJ Deschavanne, A Giron, J Vilain… - … biology and evolution, 1999 - academic.oup.com
We explored DNA structures of genomes by means of a new tool derived from the" chaotic
dynamical systems" theory (the so-called chaos game representation [CGR]), which allows …

A new graphical representation and analysis of DNA sequence structure: I. Methodology and application to globin genes

A Nandy - Current science, 1994 - JSTOR
A novel graphical approach is proposed for representing DNA sequences in a two-
dimensional cartesian co-ordinate system. The map of a DNA sequence in this …

Novel techniques of graphical representation and analysis of DNA sequences—a review

A Roy, C Raychaudhury, A Nandy - Journal of Biosciences, 1998 - Springer
The advent of automated DNA sequencing techniques has led to an explosive growth in the
number and length of DNAs sequenced frpm different organisms. While this has resulted in …

Analysis of genomic sequences by Chaos Game Representation

JS Almeida, JA Carrico, A Maretzek, PA Noble… - …, 2001 - academic.oup.com
Abstract Motivation: Chaos Game Representation (CGR) is an iterative mapping technique
that processes sequences of units, such as nucleotides in a DNA sequence or amino acids …

An investigation into inter-and intragenomic variations of graphic genomic signatures

R Karamichalis, L Kari, S Konstantinidis, S Kopecki - BMC bioinformatics, 2015 - Springer
Background Motivated by the general need to identify and classify species based on
molecular evidence, genome comparisons have been proposed that are based on …

Additive methods for genomic signatures

R Karamichalis, L Kari, S Konstantinidis, S Kopecki… - BMC …, 2016 - Springer
Background Studies exploring the potential of Chaos Game Representations (CGR) of
genomic sequences to act as “genomic signatures”(to be species-and genome-specific) …

Graphical analysis of DNA sequence structure: II. Relative abundances of nucleotides in DNAs, gene evolution and duplication

A Nandy, P Nandy - Current science, 1995 - JSTOR
A technique for graphical representation of gene sequences on a two-dimensional cartesian
coordinate system is shown to highlight visually the relative abundances of nucleotides …

Genomic signature is preserved in short DNA fragments

P Deschavanne, A Giron, J Vilain… - … Symposium on Bio …, 2000 - ieeexplore.ieee.org
The" chaos game representation"(CGR) paradigm has been implemented to display the use
of short oligonucleotides in genomes in the form of fractal images. These images can be …

Comparative study of some methods of oxidation of plant materials for elemental analysis

CL Arora, MS Bajwa - Current Science, 1994 - JSTOR
Four different methods were used to dissolve eleven different plant materials for
simultaneous estimation of several elements. In comparison to wet digestion in nitric acid …