PubTator: a web-based text mining tool for assisting biocuration
Manually curating knowledge from biomedical literature into structured databases is highly
expensive and time-consuming, making it difficult to keep pace with the rapid growth of the …
expensive and time-consuming, making it difficult to keep pace with the rapid growth of the …
An overview of the BioCreative 2012 Workshop Track III: interactive text mining task
In many databases, biocuration primarily involves literature curation, which usually involves
retrieving relevant articles, extracting information that will translate into annotations and …
retrieving relevant articles, extracting information that will translate into annotations and …
[HTML][HTML] BioC: a minimalist approach to interoperability for biomedical text processing
DC Comeau, R Islamaj Doğan, P Ciccarese… - Database, 2013 - academic.oup.com
A vast amount of scientific information is encoded in natural language text, and the quantity
of such text has become so great that it is no longer economically feasible to have a human …
of such text has become so great that it is no longer economically feasible to have a human …
Knowledge-based extraction of adverse drug events from biomedical text
Background Many biomedical relation extraction systems are machine-learning based and
have to be trained on large annotated corpora that are expensive and cumbersome to …
have to be trained on large annotated corpora that are expensive and cumbersome to …
OntoGene web services for biomedical text mining
Text mining services are rapidly becoming a crucial component of various knowledge
management pipelines, for example in the process of database curation, or for exploration …
management pipelines, for example in the process of database curation, or for exploration …
[HTML][HTML] Relation mining experiments in the pharmacogenomics domain
The mutual interactions among genes, diseases, and drugs are at the heart of biomedical
research, and are especially important for the pharmacological industry. The recent trend …
research, and are especially important for the pharmacological industry. The recent trend …
Biocuration with insufficient resources and fixed timelines
R Rodriguez-Esteban - Database, 2015 - academic.oup.com
Biological curation, or biocuration, is often studied from the perspective of creating and
maintaining databases that have the goal of mapping and tracking certain areas of biology …
maintaining databases that have the goal of mapping and tracking certain areas of biology …
Assisted curation of regulatory interactions and growth conditions of OxyR in E. coli K-12
S Gama-Castro, F Rinaldi, A Lopez-Fuentes… - Database, 2014 - academic.oup.com
Given the current explosion of data within original publications generated in the field of
genomics, a recognized bottleneck is the transfer of such knowledge into comprehensive …
genomics, a recognized bottleneck is the transfer of such knowledge into comprehensive …
Using the OntoGene pipeline for the triage task of BioCreative 2012
In this article, we describe the architecture of the OntoGene Relation mining pipeline and its
application in the triage task of BioCreative 2012. The aim of the task is to support the triage …
application in the triage task of BioCreative 2012. The aim of the task is to support the triage …
Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts
Biomedical literature curation is the process of automatically and/or manually deriving
knowledge from scientific publications and recording it into specialized databases for …
knowledge from scientific publications and recording it into specialized databases for …