Deep potentials for materials science

T Wen, L Zhang, H Wang, E Weinan… - Materials …, 2022 - iopscience.iop.org
To fill the gap between accurate (and expensive) ab initio calculations and efficient atomistic
simulations based on empirical interatomic potentials, a new class of descriptions of atomic …

Kinetics from metadynamics: Principles, applications, and outlook

D Ray, M Parrinello - Journal of Chemical Theory and …, 2023 - ACS Publications
Metadynamics is a popular enhanced sampling algorithm for computing the free energy
landscape of rare events by using molecular dynamics simulation. Ten years ago, Tiwary …

DeePMD-kit v2: A software package for deep potential models

J Zeng, D Zhang, D Lu, P Mo, Z Li, Y Chen… - The Journal of …, 2023 - pubs.aip.org
DeePMD-kit is a powerful open-source software package that facilitates molecular dynamics
simulations using machine learning potentials known as Deep Potential (DP) models. This …

Reactant-induced dynamics of lithium imide surfaces during the ammonia decomposition process

M Yang, U Raucci, M Parrinello - Nature Catalysis, 2023 - nature.com
Ammonia decomposition on lithium imide surfaces has been intensively investigated owing
to its potential role in a sustainable hydrogen-based economy. Here, through advanced …

The role of dynamics in heterogeneous catalysis: Surface diffusivity and N2 decomposition on Fe(111)

L Bonati, D Polino, C Pizzolitto… - Proceedings of the …, 2023 - National Acad Sciences
Dynamics has long been recognized to play an important role in heterogeneous catalytic
processes. However, until recently, it has been impossible to study their dynamical behavior …

Active learning of reactive Bayesian force fields applied to heterogeneous catalysis dynamics of H/Pt

J Vandermause, Y Xie, JS Lim, CJ Owen… - Nature …, 2022 - nature.com
Atomistic modeling of chemically reactive systems has so far relied on either expensive ab
initio methods or bond-order force fields requiring arduous parametrization. Here, we …

Acids at the edge: Why nitric and formic acid dissociations at air–water interfaces depend on depth and on interface specific area

M de la Puente, R David, A Gomez… - Journal of the American …, 2022 - ACS Publications
Whether the air–water interface decreases or increases the acidity of simple organic and
inorganic acids compared to the bulk is critically important in a broad range of environmental …

Machine Learning of Reactive Potentials

Y Yang, S Zhang, KD Ranasinghe… - Annual Review of …, 2024 - annualreviews.org
In the past two decades, machine learning potentials (MLPs) have driven significant
developments in chemical, biological, and material sciences. The construction and training …

Enhanced-sampling simulations for the estimation of ligand binding kinetics: current status and perspective

K Ahmad, A Rizzi, R Capelli, D Mandelli… - Frontiers in molecular …, 2022 - frontiersin.org
The dissociation rate (k off) associated with ligand unbinding events from proteins is a
parameter of fundamental importance in drug design. Here we review recent major …

Molecular insights into chemical reactions at aqueous aerosol interfaces

DT Limmer, AW Götz, TH Bertram… - Annual Review of …, 2024 - annualreviews.org
Atmospheric aerosols facilitate reactions between ambient gases and dissolved species.
Here, we review our efforts to interrogate the uptake of these gases and the mechanisms of …