TickSialoFam (TSFam): a database that helps to classify tick salivary proteins, a review on tick salivary protein function and evolution, with considerations on the tick …

JMC Ribeiro, BJ Mans - Frontiers in cellular and infection microbiology, 2020 - frontiersin.org
Tick saliva contains a complex mixture of peptides and non-peptides that counteract their
hosts' hemostasis, immunity, and tissue-repair reactions. Recent transcriptomic studies have …

Current and historic HIV-1 molecular epidemiology in paediatric and adult population from Kinshasa in the Democratic Republic of Congo

M Rubio-Garrido, JM González-Alba, G Reina… - Scientific reports, 2020 - nature.com
HIV-1 diversity may impact monitoring and vaccine development. We describe the most
recent data of HIV-1 variants and their temporal trends in the Democratic Republic of Congo …

Early and contemporary drivers of the HIV-1 group M pandemic.

JP Brennan-Calland - AIDS reviews, 2024 - search.ebscohost.com
HIV emerged silently taking time to spread and become visible only through geographically
isolated clusters of life-threatening immunodeficiency, known as AIDS since the early 80s …

Phylogenetic measures of indel rate variation among the HIV-1 group M subtypes

J Palmer, AFY Poon - Virus evolution, 2019 - academic.oup.com
The transmission fitness and pathogenesis of HIV-1 is disproportionately influenced by
evolution in the five variable regions (V1–V5) of the surface envelope glycoprotein (gp120) …

Pervasive and non-random recombination in near full-length HIV genomes from Uganda

HE Grant, EB Hodcroft, D Ssemwanga… - Virus …, 2020 - academic.oup.com
Recombination is an important feature of HIV evolution, occurring both within and between
the major branches of diversity (subtypes). The Ugandan epidemic is primarily composed of …

Genomic epidemiology and evolution of Scallion mosaic potyvirus from asymptomatic wild Japanese garlic

K Ohshima, S Kawakubo, S Muraoka, F Gao… - Frontiers in …, 2021 - frontiersin.org
Scallion mosaic virus (ScaMV) belongs to the turnip mosaic virus phylogenetic group of
potyvirus and is known to infect domestic scallion plants (Allium chinense) in China and wild …

Revisiting the recombinant history of HIV-1 group M with dynamic network community detection

AS Olabode, GT Ng, KE Wade… - Proceedings of the …, 2022 - National Acad Sciences
The prevailing abundance of full-length HIV type 1 (HIV-1) genome sequences provides an
opportunity to revisit the standard model of HIV-1 group M (HIV-1/M) diversity that clusters …

Molecular epidemiology of viral infections

RC Ferreira, C Chato, LM Baena, J Palmer… - Molecular Medical …, 2024 - Elsevier
Molecular epidemiology is the integration of epidemiology, the study of the distribution and
risk factors of disease, and molecular biology, the study of biological diversity and processes …

Phylogenomics of human immunodeficiency virus type 1 (HIV-1)

AB Abecasis, AM Vandamme, M Pingarilho - Phylogenomics, 2024 - Elsevier
HIV-1 belongs to the family of Retroviridae and to the genus of Lentivirus. Its high mutation
and recombination rates and high cell turnover result in high levels of genetic diversity. HIV …

Mutational Stability Profiling and Functional Analysis of Spike Protein In Indian Sars Cov-2 Delta Variants: An In Silico Analysis

PM Paul, K Parthasarathy, SS Rao… - Current Trends in …, 2024 - abap.co.in
Amidst the global pandemic caused by the SARS-CoV-2 virus, researchers are actively
studying its evolution and impact. This research delves into the spike protein of the SARS …