Genetic alphabet expansion technology by creating unnatural base pairs

M Kimoto, I Hirao - Chemical Society Reviews, 2020 - pubs.rsc.org
Recent advancements in the creation of artificial extra base pairs (unnatural base pairs,
UBPs) are opening the door to a new research area, xenobiology, and genetic alphabet …

Strategies for covalent labeling of long RNAs

H Depmeier, E Hoffmann, L Bornewasser… - …, 2021 - Wiley Online Library
The introduction of chemical modifications into long RNA molecules at specific positions for
visualization, biophysical investigations, diagnostic and therapeutic applications still …

Enzymatic synthesis of DNA with an expanded genetic alphabet using terminal deoxynucleotidyl transferase

G Wang, C He, J Zou, J Liu, Y Du, T Chen - ACS Synthetic Biology, 2022 - ACS Publications
Development of unnatural base pairs (UBPs) has significantly expanded the genetic
alphabet both in vitro and in vivo and led to numerous potential applications in the …

Pseudoknot length modulates the folding, conformational dynamics, and robustness of Xrn1 resistance of flaviviral xrRNAs

X Niu, R Sun, Z Chen, Y Yao, X Zuo, C Chen… - Nature …, 2021 - nature.com
To understand how RNA dynamics is regulated and connected to its function, we investigate
the folding, conformational dynamics and robustness of Xrn1 resistance of a set of flaviviral …

EPR Distance Measurements on Long Non‐coding RNAs Empowered by Genetic Alphabet Expansion Transcription

C Domnick, F Eggert, C Wuebben… - Angewandte …, 2020 - Wiley Online Library
We present herein a novel nitroxide spin label‐containing RNA triphosphate TPT3NO and
its application for site‐specific spin‐labeling of RNA through in vitro transcription using an …

The expanding world of DNA and RNA

T Chen, N Hongdilokkul, Z Liu… - Current opinion in …, 2016 - Elsevier
Highlights•Modified nucleotides stabilize and increase the potential functions of DNA and
RNA.•Modified nucleotides allow DNA and RNA to adopt protein-like structures.• …

Real-time assembly of ribonucleoprotein complexes on nascent RNA transcripts

O Duss, GA Stepanyuk, A Grot, SE O'Leary… - Nature …, 2018 - nature.com
Cellular protein-RNA complexes assemble on nascent transcripts, but methods to observe
transcription and protein binding in real time and at physiological concentrations are not …

A molecular engineering toolbox for the structural biologist

GT Debelouchina, TW Muir - Quarterly reviews of biophysics, 2017 - cambridge.org
Exciting new technological developments have pushed the boundaries of structural biology,
and have enabled studies of biological macromolecules and assemblies that would have …

Application of nucleic acid frameworks in the construction of nanostructures and cascade biocatalysts: recent progress and perspective

G Zhu, P Song, J Wu, M Luo, Z Chen… - … in Bioengineering and …, 2022 - frontiersin.org
Nucleic acids underlie the storage and retrieval of genetic information literally in all living
organisms, and also provide us excellent materials for making artificial nanostructures and …

Cyclopropenes: a new tool for the study of biological systems

JMJM Ravasco, CM Monteiro… - Organic Chemistry …, 2017 - pubs.rsc.org
The development of novel bioorthogonal reagents for biological applications has increased
considerably in the last decade. Of these tools, the modification of biological entities by …