If validated, diet‐derived foreign microRNA absorption and function in consuming
vertebrates would drastically alter our understanding of nutrition and ecology. RNA …

Mass spectrometry–based proteomics has emerged as the leading method for detection,
quantification, and characterization of proteins. Nearly all proteomic workflows rely on …

Alternative splicing (AS) of pre-mRNAs in higher eukaryotes and several viruses is one
major source of protein diversity. Usually, the following major subtypes of AS are …

Methamphetamine (METH) is a highly addictive psychostimulant that elicits aberrant
changes in the expression of microRNAs (miRNAs) and long non-coding RNAs (lncRNAs) in …

Alternative splicing is a major diversification mechanism in the human transcriptome and
proteome. Several diseases, including cancers, have been associated with dysregulation of …

Motivation. Alternative splicing events (ASEs) are prevalent in the transcriptome of
eukaryotic species and are known to influence many biological phenomena. The …

In this manuscript we describe Proteogenomics Viewer, a web‐based tool that collects MS
peptide identification, indexes to genomic sequence and structure, assigns exon usage …

Integration of transcriptome data is a crucial step for the identification of rare protein variants
in mass-spectrometry (MS) data with important consequences for all branches of …

Splicing regulatory elements (SREs) are short, degenerate sequences on pre-mRNA
molecules that enhance or inhibit the splicing process via the binding of splicing factors …

Next-generation sequencing is allowing an exhaustive exploration of the complexity of the
human transcriptome through RNA-Seqtechnologies [1, 2]. What would be a dream ten …