[HTML][HTML] The Tumor Profiler Study: integrated, multi-omic, functional tumor profiling for clinical decision support

A Irmisch, X Bonilla, S Chevrier, KV Lehmann, F Singer… - Cancer Cell, 2021 - cell.com
The application and integration of molecular profiling technologies create novel
opportunities for personalized medicine. Here, we introduce the Tumor Profiler Study, an …

Knowledge bases and software support for variant interpretation in precision oncology

F Borchert, A Mock, A Tomczak, J Hügel… - Briefings in …, 2021 - academic.oup.com
Precision oncology is a rapidly evolving interdisciplinary medical specialty. Comprehensive
cancer panels are becoming increasingly available at pathology departments worldwide …

Pathologists at the leading edge of optimizing the tumor tissue journey for diagnostic accuracy and molecular testing

LE De Las Casas, DG Hicks - American journal of clinical …, 2021 - academic.oup.com
Objectives Tumor biomarker analyses accompanying immuno-oncology therapies are
coupled with a tumor tissue journey aiming to guide tissue procurement and allow for …

Improving prediction performance of colon cancer prognosis based on the integration of clinical and multi-omics data

D Tong, Y Tian, T Zhou, Q Ye, J Li, K Ding… - BMC Medical Informatics …, 2020 - Springer
Background Colon cancer is common worldwide and is the leading cause of cancer-related
death. Multiple levels of omics data are available due to the development of sequencing …

Variomes: a high recall search engine to support the curation of genomic variants

E Pasche, A Mottaz, D Caucheteur, J Gobeill… - …, 2022 - academic.oup.com
Motivation Identification and interpretation of clinically actionable variants is a critical
bottleneck. Searching for evidence in the literature is mandatory according to …

scAmpi—A versatile pipeline for single-cell RNA-seq analysis from basics to clinics

A Bertolini, M Prummer, MA Tuncel… - PLoS computational …, 2022 - journals.plos.org
Single-cell RNA sequencing (scRNA-seq) has emerged as a powerful technique to decipher
tissue composition at the single-cell level and to inform on disease mechanisms, tumor …

MTPpilot: an interactive software for visualization of next-generation sequencing results in molecular tumor boards

A Kahraman, FM Arnold, J Hanimann… - JCO Clinical Cancer …, 2022 - ascopubs.org
PURPOSE Comprehensive targeted next-generation sequencing (NGS) panels are
routinely used in modern molecular cancer diagnostics. In molecular tumor boards, the …

Development of a precision medicine workflow in hematological cancers, Aalborg University Hospital, Denmark

JS Bødker, M Sønderkær, C Vesteghem, A Schmitz… - Cancers, 2020 - mdpi.com
Within recent years, many precision cancer medicine initiatives have been developed. Most
of these have focused on solid cancers, while the potential of precision medicine for patients …

Development and validation of ACTE-MTB: A tool to systematically assess the maturity of molecular tumor boards

TM Love, DA Anaya, MS Prime, L Ardolino, O Ekinci - Plos one, 2022 - journals.plos.org
Molecular tumor boards (MTBs) require specialized activities to leverage genomic data for
therapeutic decision-making. Currently, there are no defined standards for implementing …

[HTML][HTML] Circulating Tumor Reactive KIR+ CD8+ T cells Suppress Anti-Tumor Immunity in Patients with Melanoma

D Hafler, B Lu, L Lucca, W Lewis, J Wang… - Research …, 2024 - ncbi.nlm.nih.gov
Effective anti-tumor immunity is largely driven by cytotoxic CD8+ T cells that can specifically
recognize tumor antigens. However, the factors which ultimately dictate successful tumor …