Free and open source software for computational chemistry education

S Lehtola, AJ Karttunen - Wiley Interdisciplinary Reviews …, 2022 - Wiley Online Library
After decades of waiting, computational chemistry for the masses is finally here. Our brief
review on free and open source software (FOSS) packages points out the existence of …

[HTML][HTML] Open source molecular modeling

S Pirhadi, J Sunseri, DR Koes - Journal of Molecular Graphics and …, 2016 - Elsevier
The success of molecular modeling and computational chemistry efforts are, by definition,
dependent on quality software applications. Open source software development provides …

Low availability of code in ecology: A call for urgent action

A Culina, I van den Berg, S Evans… - PLoS Biology, 2020 - journals.plos.org
Access to analytical code is essential for transparent and reproducible research. We review
the state of code availability in ecology using a random sample of 346 nonmolecular articles …

Growing Spicy ONIOMs: Extending and generalizing concepts of ONIOM and many body expansions

P Seeber, S Seidenath, J Steinmetzer… - Wiley Interdisciplinary …, 2023 - Wiley Online Library
The ONIOM method and many extensions to it provide capabilities to treat challenging
multiscale problems in catalysis and material science. Our open‐source program Spicy is a …

Libra: an open‐source “methodology discovery” library for quantum and classical dynamics simulations

AV Akimov - 2016 - Wiley Online Library
The “methodology discovery” library for quantum and classical dynamics simulations is
presented. One of the major foci of the code is on nonadiabatic molecular dynamics …

Finding the traces of behavioral and cognitive processes in big data and naturally occurring datasets

A Paxton, TL Griffiths - Behavior research methods, 2017 - Springer
Today, people generate and store more data than ever before as they interact with both real
and virtual environments. These digital traces of behavior and cognition offer cognitive …

Ab Initio Methods in First‐Row Transition Metal Chemistry

M Feldt, QM Phung - European Journal of Inorganic Chemistry, 2022 - Wiley Online Library
Molecules containing 3d transition metals (TMs) are usually associated with versatile
reactivity, partly due to their complicated electronic structures involving multiple close‐lying …

Language models in molecular discovery

N Janakarajan, T Erdmann, S Swaminathan… - … Supported by Informatics, 2024 - Springer
The success of language models, especially transformer-based architectures, has trickled
into other scientific domains, giving rise to the concept of “scientific language models” that …

Hack weeks as a model for data science education and collaboration

D Huppenkothen, A Arendt, DW Hogg… - Proceedings of the …, 2018 - National Acad Sciences
Across many scientific disciplines, methods for recording, storing, and analyzing data are
rapidly increasing in complexity. Skillfully using data science tools that manage this …

Novel computer architectures and quantum chemistry

MS Gordon, G Barca, SS Leang, D Poole… - The Journal of …, 2020 - ACS Publications
Electronic structure theory (especially quantum chemistry) has thrived and has become
increasingly relevant to a broad spectrum of scientific endeavors as the sophistication of …