[HTML][HTML] Hybrid methods for combined experimental and computational determination of protein structure

JT Seffernick, S Lindert - The Journal of chemical physics, 2020 - pubs.aip.org
Knowledge of protein structure is paramount to the understanding of biological function,
developing new therapeutics, and making detailed mechanistic hypotheses. Therefore …

Towards atomic resolution structural determination by single-particle cryo-electron microscopy

ZH Zhou - Current opinion in structural biology, 2008 - Elsevier
Recent advances in cryo-electron microscopy and single-particle reconstruction (collectively
referred to as 'cryoEM') have made it possible to determine the three-dimensional (3D) …

[PDF][PDF] Tools for macromolecular model building and refinement into electron cryo-microscopy reconstructions

A Brown, F Long, RA Nicholls, J Toots… - … Section D: Biological …, 2015 - journals.iucr.org
The recent rapid development of single-particle electron cryo-microscopy (cryo-EM) now
allows structures to be solved by this method at resolutions close to 3 Å. Here, a number of …

Outcome of the first electron microscopy validation task force meeting

R Henderson, A Sali, ML Baker, B Carragher… - Structure, 2012 - cell.com
This Meeting Review describes the proceedings and conclusions from the inaugural
meeting of the Electron Microscopy Validation Task Force organized by the Unified Data …

EMDataBank. org: unified data resource for CryoEM

CL Lawson, ML Baker, C Best, C Bi… - Nucleic acids …, 2010 - academic.oup.com
Cryo-electron microscopy reconstruction methods are uniquely able to reveal structures of
many important macromolecules and macromolecular complexes. EMDataBank. org, a joint …

Refinement of protein structures into low-resolution density maps using rosetta

F DiMaio, MD Tyka, ML Baker, W Chiu… - Journal of molecular …, 2009 - Elsevier
We describe a method based on Rosetta structure refinement for generating high-resolution,
all-atom protein models from electron cryomicroscopy density maps. A local measure of the …

Integrated NMR and cryo-EM atomic-resolution structure determination of a half-megadalton enzyme complex

DF Gauto, LF Estrozi, CD Schwieters, G Effantin… - Nature …, 2019 - nature.com
Atomic-resolution structure determination is crucial for understanding protein function. Cryo-
EM and NMR spectroscopy both provide structural information, but currently cryo-EM does …

4.4 Å cryo‐EM structure of an enveloped alphavirus Venezuelan equine encephalitis virus

R Zhang, CF Hryc, Y Cong, X Liu, J Jakana… - The EMBO …, 2011 - embopress.org
Venezuelan equine encephalitis virus (VEEV), a member of the membrane‐containing
Alphavirus genus, is a human and equine pathogen, and has been developed as a …

Single particle cryo-electron microscopy and 3-D reconstruction of viruses

F Guo, W Jiang - Electron microscopy: methods and protocols, 2014 - Springer
With fast progresses in instrumentation, image processing algorithms, and computational
resources, single particle electron cryo-microscopy (cryo-EM) 3-D reconstruction of …

Backbone structure of the infectious ε15 virus capsid revealed by electron cryomicroscopy

W Jiang, ML Baker, J Jakana, PR Weigele, J King… - Nature, 2008 - nature.com
A half-century after the determination of the first three-dimensional crystal structure of a
protein, more than 40,000 structures ranging from single polypeptides to large assemblies …