Broken detailed balance and non-equilibrium dynamics in living systems: a review

FS Gnesotto, F Mura, J Gladrow… - Reports on Progress in …, 2018 - iopscience.iop.org
Living systems operate far from thermodynamic equilibrium. Enzymatic activity can induce
broken detailed balance at the molecular scale. This molecular scale breaking of detailed …

From stochastic thermodynamics to thermodynamic inference

U Seifert - Annual Review of Condensed Matter Physics, 2019 - annualreviews.org
For a large class of nonequilibrium systems, thermodynamic notions like work, heat, and, in
particular, entropy production can be identified on the level of fluctuating dynamical …

Mutual linearity of nonequilibrium network currents

PE Harunari, S Dal Cengio, V Lecomte, M Polettini - Physical Review Letters, 2024 - APS
For continuous-time Markov chains and open unimolecular chemical reaction networks, we
prove that any two stationary currents are linearly related upon perturbations of a single …

The role of kinetic asymmetry and power strokes in an information ratchet

L Binks, S Borsley, TR Gingrich, DA Leigh… - Chem, 2023 - cell.com
Biomolecular machines are driven by information ratchet mechanisms, where kinetic
asymmetry in the machine's chemomechanical cycle of fuel-to-waste catalysis induces net …

Nonequilibrium thermodynamics of chemical reaction networks: Wisdom from stochastic thermodynamics

R Rao, M Esposito - Physical Review X, 2016 - APS
We build a rigorous nonequilibrium thermodynamic description for open chemical reaction
networks of elementary reactions. Their dynamics is described by deterministic rate …

Size limits the sensitivity of kinetic schemes

JA Owen, JM Horowitz - Nature Communications, 2023 - nature.com
Living things benefit from exquisite molecular sensitivity in many of their key processes,
including DNA replication, transcription and translation, chemical sensing, and …

Molecular ratchets and kinetic asymmetry: Giving chemistry direction

S Borsley, DA Leigh… - Angewandte Chemie …, 2024 - Wiley Online Library
Over the last two decades ratchet mechanisms have transformed the understanding and
design of stochastic molecular systems—biological, chemical and physical—in a move away …

Cost and precision of Brownian clocks

AC Barato, U Seifert - Physical Review X, 2016 - APS
Brownian clocks are biomolecular networks that can count time. A paradigmatic example are
proteins that go through a cycle, thus regulating some oscillatory behavior in a living system …

Stochastic thermodynamics of resetting

J Fuchs, S Goldt, U Seifert - Europhysics Letters, 2016 - iopscience.iop.org
Stochastic dynamics with random resetting leads to a non-equilibrium steady state. Here, we
consider the thermodynamics of resetting by deriving the first and second law for resetting …

Universal minimal cost of coherent biochemical oscillations

L Oberreiter, U Seifert, AC Barato - Physical Review E, 2022 - APS
Biochemical clocks are essential for virtually all living systems. A biochemical clock that is
isolated from an external periodic signal and subjected to fluctuations can oscillate …