Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science

DR Unni, SAT Moxon, M Bada, M Brush… - Clinical and …, 2022 - Wiley Online Library
Within clinical, biomedical, and translational science, an increasing number of projects are
adopting graphs for knowledge representation. Graph‐based data models elucidate the …

Research applications of primary biodiversity databases in the digital age

JE Ball-Damerow, L Brenskelle, N Barve, PS Soltis… - PloS one, 2019 - journals.plos.org
Our world is in the midst of unprecedented change—climate shifts and sustained,
widespread habitat degradation have led to dramatic declines in biodiversity rivaling …

The IUPHAR/BPS Guide to PHARMACOLOGY in 2018: updates and expansion to encompass the new guide to IMMUNOPHARMACOLOGY

SD Harding, JL Sharman, E Faccenda… - Nucleic acids …, 2018 - academic.oup.com
Abstract The IUPHAR/BPS Guide to PHARMACOLOGY (GtoPdb, www.
guidetopharmacology. org) and its precursor IUPHAR-DB, have captured expert-curated …

FAIRsharing as a community approach to standards, repositories and policies

SA Sansone, P McQuilton, P Rocca-Serra… - Nature …, 2019 - nature.com
How and when these regulatory gaps are closed could have profound consequences for the
marine biotech industry. The reach of the Nagoya Protocol into digital sequence information …

Ten quick tips for harnessing the power of ChatGPT in computational biology

T Lubiana, R Lopes, P Medeiros, JC Silva… - PLoS Computational …, 2023 - journals.plos.org
The rise of advanced chatbots, such as ChatGPT, has stirred excitement and curiosity in the
scientific community. Powered by large language models (LLMs) based on generative …

Packaging research artefacts with RO-Crate

S Soiland-Reyes, P Sefton, M Crosas, LJ Castro… - Data …, 2022 - content.iospress.com
An increasing number of researchers support reproducibility by including pointers to and
descriptions of datasets, software and methods in their publications. However, scientific …

FAIR principles: interpretations and implementation considerations

A Jacobsen, R de Miranda Azevedo, N Juty… - Data …, 2020 - direct.mit.edu
The FAIR principles have been widely cited, endorsed and adopted by a broad range of
stakeholders since their publication in 2016. By intention, the 15 FAIR guiding principles do …

The Antibody Registry: ten years of registering antibodies

A Bandrowski, M Pairish, P Eckmann… - Nucleic acids …, 2023 - academic.oup.com
Antibodies are ubiquitous key biological research resources yet are tricky to use as they are
prone to performance issues and represent a major source of variability across studies …

KG-COVID-19: a framework to produce customized knowledge graphs for COVID-19 response

JT Reese, D Unni, TJ Callahan, L Cappelletti… - Patterns, 2021 - cell.com
Integrated, up-to-date data about SARS-CoV-2 and COVID-19 is crucial for the ongoing
response to the COVID-19 pandemic by the biomedical research community. While rich …

A simple standard for sharing ontological mappings (SSSOM)

N Matentzoglu, JP Balhoff, SM Bello, C Bizon… - Database, 2022 - academic.oup.com
Despite progress in the development of standards for describing and exchanging scientific
information, the lack of easy-to-use standards for mapping between different representations …