The nature of embryonic stem cells

G Martello, A Smith - Annual review of cell and developmental …, 2014 - annualreviews.org
Mouse embryonic stem (ES) cells perpetuate in vitro the broad developmental potential of
naïve founder cells in the preimplantation embryo. ES cells self-renew relentlessly in culture …

Origins and implications of pluripotent stem cell variability and heterogeneity

P Cahan, GQ Daley - Nature reviews Molecular cell biology, 2013 - nature.com
Pluripotent stem cells constitute a platform to model disease and developmental processes
and can potentially be used in regenerative medicine. However, not all pluripotent cell lines …

[HTML][HTML] Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells

AM Klein, L Mazutis, I Akartuna, N Tallapragada… - Cell, 2015 - cell.com
It has long been the dream of biologists to map gene expression at the single-cell level. With
such data one might track heterogeneous cell sub-populations, and infer regulatory …

Single cell RNA-sequencing of pluripotent states unlocks modular transcriptional variation

AA Kolodziejczyk, JK Kim, JCH Tsang, T Ilicic… - Cell stem cell, 2015 - cell.com
Embryonic stem cell (ESC) culture conditions are important for maintaining long-term self-
renewal, and they influence cellular pluripotency state. Here, we report single cell RNA …

Deconstructing transcriptional heterogeneity in pluripotent stem cells

RM Kumar, P Cahan, AK Shalek, R Satija… - Nature, 2014 - nature.com
Pluripotent stem cells (PSCs) are capable of dynamic interconversion between distinct
substates; however, the regulatory circuits specifying these states and enabling transitions …

Reprogramming the methylome: erasing memory and creating diversity

HJ Lee, TA Hore, W Reik - Cell stem cell, 2014 - cell.com
The inheritance of epigenetic marks, in particular DNA methylation, provides a molecular
memory that ensures faithful commitment to transcriptional programs during mammalian …

[HTML][HTML] Stem cell differentiation as a non-Markov stochastic process

PS Stumpf, RCG Smith, M Lenz, A Schuppert, FJ Müller… - Cell Systems, 2017 - cell.com
Pluripotent stem cells can self-renew in culture and differentiate along all somatic lineages
in vivo. While much is known about the molecular basis of pluripotency, the mechanisms of …

Transcription factor heterogeneity in pluripotent stem cells: a stochastic advantage

ME Torres-Padilla, I Chambers - Development, 2014 - journals.biologists.com
When pluripotent cells are exposed to a uniform culture environment they routinely display
heterogeneous gene expression. Aspects of this heterogeneity, such as Nanog expression …

Molecular features of cellular reprogramming and development

ZD Smith, C Sindhu, A Meissner - Nature reviews Molecular cell biology, 2016 - nature.com
Differentiating somatic cells are progressively restricted to specialized functions during
ontogeny, but they can be experimentally directed to form other cell types, including those …

Molecular basis of embryonic stem cell self-renewal: from signaling pathways to pluripotency network

G Huang, S Ye, X Zhou, D Liu, QL Ying - Cellular and molecular life …, 2015 - Springer
Embryonic stem cells (ESCs) can be maintained in culture indefinitely while retaining the
capacity to generate any type of cell in the body, and therefore not only hold great promise …