Exploring the conformational and reactive dynamics of biomolecules in solution using an extended version of the glycine reactive force field

S Monti, A Corozzi, P Fristrup, KL Joshi… - Physical Chemistry …, 2013 - pubs.rsc.org
In order to describe possible reaction mechanisms involving amino acids, and the evolution
of the protonation state of amino acid side chains in solution, a reactive force field (ReaxFF …

Mechanism of acid-catalyzed hydrolysis of formamide from cluster-continuum model calculations: concerted versus stepwise pathway

B Wang, Z Cao - The Journal of Physical Chemistry A, 2010 - ACS Publications
The acid-catalyzed hydrolysis of formamide in aqueous solutions was investigated by ab
initio calculations. Solvent effects on the hydrolysis reaction were reasonably considered by …

Theoretical studies on the ring opening of β-lactams: Processes in solution and in enzymatic media

R Lopez, MI Menendez, N Diaz… - Current Organic …, 2006 - ingentaconnect.com
Herein we present an overview of the theoretical studies on the cleavage of the β-lactam CN
bond in aqueous solution and in enzymatic media. We discuss first the alkaline hydrolysis of …

Neutral and alkaline hydrolyses of model β-lactam antibiotics. An ab initio study of water catalysis

J Pitarch, MF Ruiz-López, E Silla… - Journal of the …, 1998 - ACS Publications
The effect of an ancillary water molecule on the neutral and alkaline hydrolysis mechanisms
of a simple β-lactam molecule (N-methylazetidinone) has been studied at the Hartree− Fock …

[PDF][PDF] Alkaline and acidic hydrolysis of the β-lactam ring

J Frau, M Coll, J Donoso, F Muñoz… - Electronic Journal of …, 1997 - academia.edu
SUMMARY A complete study of the alkaline and acidic hydrolysis of the β-lactam ring of
azetidin-2-one was carried out using ab initio molecular orbital calculations at the RHF/6 …

Understanding the acylation mechanisms of active‐site serine penicillin‐recognizing proteins: A molecular dynamics simulation study

M Oliva, O Dideberg, MJ Field - Proteins: Structure, Function …, 2003 - Wiley Online Library
Abstract β‐Lactam antibiotics inhibit enzymes involved in the last step of peptidoglycan
synthesis. These enzymes, also identified as penicillin‐binding proteins (PBPs), form a long …

Degradation of ampicillin in the presence of cadmium (II) ions

AM Garcı́a, PG Navarro, PJM de las Parras - Talanta, 1998 - Elsevier
Cadmium (II) ion-catalyzed degradation of ampicillin in methanol at 20° C has been studied.
It has been observed that the rate values tend to saturate when the concentration of …

SCF theory of intermolecular interactions without basis set superposition error

I Mayer, Á Vibök - Chemical physics letters, 1987 - Elsevier
Abstract Special SCF LCAO MO type equations are derived, permitting “supermolecule”
calculations for intermolecular interactions, excluding basis set superposition error (BSSE) …

Acylation of class A β-lactamases by penicillins: a theoretical examination of the role of serine 130 and the β-lactam carboxylate group

N Díaz, D Suárez, TL Sordo… - The Journal of Physical …, 2001 - ACS Publications
Herein we present results of a computational study on the benzylpenicillin acylation of the
class A TEM1 β-lactamase via hydroxyl-only and hydroxyl and carboxylate assisted …

Ampicillin acidity and formation constants with some metals and their thermodynamic parameters in different media. Crystal structures of two polymorphs isolated from …

MJ Zaworotko, HH Hammud, I abbas… - Journal of …, 2006 - Taylor & Francis
The dissociation constants of ampicillin and the formation constants of complexes with
cobalt (II), copper (II), nickel (II), iron (III), zinc (II), lead (II), mercury (II) and cadmium (II) were …