[PDF][PDF] Yeast osmoregulation–glycerol still in pole position

A Blomberg - FEMS Yeast Research, 2022 - academic.oup.com
In response to osmotic dehydration cells sense, signal, alter gene expression, and
metabolically counterbalance osmotic differences. The main compatible solute/osmolyte that …

The regulatory landscape of the yeast phosphoproteome

M Leutert, AS Barente, NK Fukuda… - Nature structural & …, 2023 - nature.com
The cellular ability to react to environmental fluctuations depends on signaling networks that
are controlled by the dynamic activities of kinases and phosphatases. Here, to gain insight …

Phosphoproteome Response to Dithiothreitol Reveals Unique Versus Shared Features of Saccharomyces cerevisiae Stress Responses

ME MacGilvray, E Shishkova, M Place… - Journal of proteome …, 2020 - ACS Publications
To cope with sudden changes in the external environment, the budding yeast
Saccharomyces cerevisiae orchestrates a multifaceted response that spans many levels of …

The chaperone Tsr2 regulates Rps26 release and reincorporation from mature ribosomes to enable a reversible, ribosome-mediated response to stress

YM Yang, K Karbstein - Science Advances, 2022 - science.org
Although ribosome assembly is quality controlled to maintain protein homeostasis, different
ribosome populations have been described. How these form, especially under stress …

Breadth and Specificity in Pleiotropic Protein Kinase A Activity and Environmental Responses

RA Kocik, AP Gasch - Frontiers in Cell and Developmental Biology, 2022 - frontiersin.org
Protein Kinase A (PKA) is an essential kinase that is conserved across eukaryotes and plays
fundamental roles in a wide range of organismal processes, including growth control …

PHONEMeS: efficient modeling of signaling networks derived from large-scale mass spectrometry data

E Gjerga, A Dugourd, L Tobalina, A Sousa… - Journal of Proteome …, 2021 - ACS Publications
Post-translational modifications of proteins play an important role in the regulation of cellular
processes. The mass spectrometry analysis of proteome modifications offers huge potential …

Rewired cellular signaling coordinates sugar and hypoxic responses for anaerobic xylose fermentation in yeast

KS Myers, NM Riley, ME MacGilvray, TK Sato… - PLoS …, 2019 - journals.plos.org
Microbes can be metabolically engineered to produce biofuels and biochemicals, but
rerouting metabolic flux toward products is a major hurdle without a systems-level …

Synthesizing signaling pathways from temporal phosphoproteomic data

AS Köksal, K Beck, DR Cronin, A McKenna, ND Camp… - Cell reports, 2018 - cell.com
We present a method for automatically discovering signaling pathways from time-resolved
phosphoproteomic data. The Temporal Pathway Synthesizer (TPS) algorithm uses …

The interplay between prior selection, mild intermittent exposure, and acute severe exposure in phenotypic and transcriptional response to hypoxia

MN Ekwudo, MC Malek, CE Anderson… - Ecology and …, 2022 - Wiley Online Library
Hypoxia has profound and diverse effects on aerobic organisms, disrupting oxidative
phosphorylation and activating several protective pathways. Predictions have been made …

A Feed-Forward Subnetwork Emerging from Integrated TOR- and cAMP/PKA-Signaling Architecture Reinforces Magnaporthe oryzae Appressorium Morphogenesis

G Sun, X Qi, RA Wilson - Molecular Plant-Microbe Interactions, 2019 - Am Phytopath Society
Appressoria are important mediators of plant–microbe interactions. In the devastating rice
blast pathogen Magnaporthe oryzae, appressorial morphogenesis from germ tube tips …