A systematic review on biomarker identification for cancer diagnosis and prognosis in multi-omics: from computational needs to machine learning and deep learning

A Dhillon, A Singh, VK Bhalla - Archives of Computational Methods in …, 2023 - Springer
Biomarkers, also known as biological markers, are substances like transcripts,
deoxyribonucleic acid (DNA), genes, proteins, and metabolites that indicate whether a …

Comprehensive review of web servers and bioinformatics tools for cancer prognosis analysis

H Zheng, G Zhang, L Zhang, Q Wang, H Li… - Frontiers in …, 2020 - frontiersin.org
Prognostic biomarkers are of great significance to predict the outcome of patients with
cancer, to guide the clinical treatments, to elucidate tumorigenesis mechanisms, and offer …

OSskcm: an online survival analysis webserver for skin cutaneous melanoma based on 1085 transcriptomic profiles

L Zhang, Q Wang, L Wang, L Xie, Y An, G Zhang… - Cancer Cell …, 2020 - Springer
Background Cutaneous melanoma is one of the most aggressive and lethal skin cancers. It
is greatly important to identify prognostic biomarkers to guide the clinical management …

Integration of artificial intelligence, machine learning and deep learning techniques in genomics: review on computational perspectives for NGS analysis of DNA and …

K Chandrashekar, V Niranjan, A Vishal… - Current …, 2024 - benthamdirect.com
In the current state of genomics and biomedical research, the utilization of Artificial
Intelligence (AI), Machine Learning (ML) and Deep Learning (DL) have emerged as …

IOFS-SA: An interactive online feature selection tool for survival analysis

X Zhao, Y He, Y Wu, T Liu, G Wang - Computers in Biology and Medicine, 2022 - Elsevier
Background: Survival analysis is a primary problem before clinical treatments to cancer
patients after their operations. In order to make this kind of analysis simple, many …

Adaptive risk-aware sharable and individual subspace learning for cancer survival analysis with multi-modality data

Z Zhao, Q Feng, Y Zhang, Z Ning - Briefings in Bioinformatics, 2023 - academic.oup.com
Biomedical multi-modality data (also named multi-omics data) refer to data that span
different types and derive from multiple sources in clinical practices (eg gene sequences …

ToPP: Tumor online prognostic analysis platform for prognostic feature selection and clinical patient subgroup selection

J Ouyang, G Qin, Z Liu, X Jian, T Shi, L Xie - Iscience, 2022 - cell.com
Patients with cancer with different molecular characterization and subtypes result in different
response to anticancer therapeutics and survival. To identify features that are associated …

CancerTracer: a curated database for intrapatient tumor heterogeneity

C Wang, J Yang, H Luo, K Wang, Y Wang… - Nucleic acids …, 2020 - academic.oup.com
Comprehensive genomic analyses of cancers have revealed substantial intrapatient
molecular heterogeneities that may explain some instances of drug resistance and treatment …

VICTOR: A visual analytics web application for comparing cluster sets

E Karatzas, M Gkonta, J Hotova, FA Baltoumas… - Computers in Biology …, 2021 - Elsevier
Clustering is the process of grouping different data objects based on similar properties.
Clustering has applications in various case studies from several fields such as graph theory …

OScc: an online survival analysis web server to evaluate the prognostic value of biomarkers in cervical cancer

Q Wang, L Zhang, Z Yan, L Xie, Y An, H Li, Y Han… - Future …, 2019 - Taylor & Francis
Aim: To establish a web server that can mutually validate prognostic biomarkers of cervical
cancer. Methods: Four datasets including expression profiling and relative clinical follow-up …