A review of heuristics and metaheuristics for community detection in complex networks: Current usage, emerging development and future directions

AA Bara'a, AD Abbood, AA Hasan, C Pizzuti… - Swarm and Evolutionary …, 2021 - Elsevier
Sensibly highlighting the hidden structures of many real-world networks has attracted
growing interest and triggered a vast array of techniques on what is called nowadays …

Nature-inspired optimization algorithms for community detection in complex networks: a review and future trends

DA Abduljabbar, SZM Hashim… - Telecommunication …, 2020 - Springer
Over the past couple of decades, the research area of network community detection has
seen substantial growth in popularity, leading to a wide range of researches in the literature …

Identification of protein complexes by using a spatial and temporal active protein interaction network

M Li, X Meng, R Zheng, FX Wu, Y Li… - … /ACM transactions on …, 2017 - ieeexplore.ieee.org
The rapid development of proteomics and high-throughput technologies has produced a
large amount of Protein-Protein Interaction (PPI) data, which makes it possible for …

A new evolutionary algorithm with locally assisted heuristic for complex detection in protein interaction networks

AH Abdulateef, AA Bara'a, AN Rashid, M Al-Ani - Applied Soft Computing, 2018 - Elsevier
The detection of protein complexes is an essential NP-hard problem in protein-protein
interaction networks (PPI). Modularity, community score, ratio cut, and internal density are …

Overlapping complexes detection within protein interaction networks using improved genetic algorithm

DA Abduljabbar - Human Gene, 2024 - Elsevier
Background The protein complexes detection has an important role in analyzing biological
processes and understanding life at the cellular level. Although many complex detection …

Identifying protein complexes in PPI network using non-cooperative sequential game

U Maulik, S Basu, S Ray - Scientific reports, 2017 - nature.com
Identifying protein complexes from protein-protein interaction (PPI) network is an important
and challenging task in computational biology as it helps in better understanding of cellular …

Disease associated protein complex detection: a multi-objective evolutionary approach

S Ray, A Hossain, U Maulik - 2016 International conference on …, 2016 - ieeexplore.ieee.org
Biological networks such as protein-protein interaction networks (PPINs) play a crucial role
in cell biology of an organism and are widely studied in bioinformatics and biostatistics …

[PDF][PDF] Overlapping Structure Detection in Protein-Protein Interaction Networks Using a Modified Version of Particle Swarm Optimization

DA Abduljabbar, IA Abdulmunem - Iraqi Journal of Science, 2024 - iasj.net
In today's world, the science of bioinformatics is developing rapidly, especially with regard to
the analysis and study of biological networks. Scientists have used various nature-inspired …

Evolutionary algorithms for applications of biological networks: A review

G Liu, Q Liu, L Ma, Z Shao - … , ICIC 2021, Shenzhen, China, August 12–15 …, 2021 - Springer
With the rapid development of next-generation sequencing and high-throughput
technologies, much biological data have been generated. The analysis of biological …

[PDF][PDF] Study on Deep Transfer Learning Methods for the Predictions of Protein Functions

袁欣 - 2022 - waseda.repo.nii.ac.jp
Carbohydrates, proteins and lipids are the three essential substances of life. Protein as one
of them participates in almost all life activities. Protein function is the sum of all the behaviors …