Ab initio metadynamics calculations of dimethylamine for probing p K b variations in bulk vs. surface environments

S Biswas, H Kwon, KC Barsanti, N Myllys… - Physical Chemistry …, 2020 - pubs.rsc.org
The basicity constant, or pKb, is an intrinsic physical property of bases that gives a measure
of its proton affinity in macroscopic environments. While the pKb is typically defined in …

Water structure in glycerol: Spectroscopic and computer simulation investigation of hydrogen bonding and water clustering

K Wu, S Feng, A Hedoux, E Shalaev - Journal of Molecular Liquids, 2022 - Elsevier
Abstract Properties of polyhydroxycompounds, such as sugars and polyols, which are used
to stabilize various pharmaceuticals and biological objects during freezing, desiccation, and …

Water content thresholds in glycerol/water system: Low-and high-wavenumber Raman spectroscopy study

T Starciuc, Y Guinet, A Hedoux, E Shalaev - Journal of Molecular Liquids, 2021 - Elsevier
Water structure is the key in such diverse processes as protein folding, catalysis of chemical
reactions, and stability of pharmaceuticals and biopharmaceuticals. In the current …

Mechanism and Electronic Perspective of Oxygen Evolution Reactions Catalyzed by [Fe(OTf)2(bpbp)]

KR Gorantla, BS Mallik - The Journal of Physical Chemistry C, 2021 - ACS Publications
We performed first-principles molecular dynamics simulations to study the process of water
oxidation by the iron-based molecular catalyst [Fe (OTf) 2 (bpbp)](OTf …

Time-dependent vibrational spectral analysis of first principles trajectory of methylamine with wavelet transform

S Biswas, BS Mallik - Physical Chemistry Chemical Physics, 2017 - pubs.rsc.org
The fluctuation dynamics of amine stretching frequencies, hydrogen bonds, dangling N–D
bonds, and the orientation profile of the amine group of methylamine (MA) were investigated …

Influence of Base Strength on the Proton‐Transfer Reaction by Density Functional Theory

B Yuan, R He, W Shen, M Li - European Journal of Organic …, 2017 - Wiley Online Library
DFT methods have been used to investigate base‐assisted effects on proton‐transfer
reactions, including the cleavage of C–H bonds in metal‐catalyzed organic synthesis. Anion …

A delicate case of unidirectional proton transfer from water to an aromatic heterocyclic anion

S Biswas, BS Mallik - Physical Chemistry Chemical Physics, 2016 - pubs.rsc.org
We present the characteristic proton transfer process from water to the pyrazole anion,
infrared signatures of hydroxyl groups and the free energy profile of the process in aqueous …

Proton transfer from water to aromatic N-heterocyclic anions from DFT-MD simulations

A Priyadarsini, BS Mallik - Journal of Molecular Graphics and Modelling, 2021 - Elsevier
The phenomenon of proton transfer from water to six N-heterocyclic anions and free energy
landscapes of this process are studied using both electronic structure calculations and first …

Water Distribution on Protein Surface of the Lyophilized Proteins With Different Topography Studied by Molecular Dynamics Simulations

S Feng, GHJ Peters, E Shalaev - Journal of Pharmaceutical Sciences, 2022 - Elsevier
Water play an important role in many structural and physicochemical properties of
lyophilized proteins. Molecular dynamics simulations were employed to study the explicit …