Real-time three-dimensional cell segmentation in large-scale microscopy data of developing embryos

J Stegmaier, F Amat, WC Lemon, K McDole, Y Wan… - Developmental cell, 2016 - cell.com
We present the Real-time Accurate Cell-shape Extractor (RACE), a high-throughput image
analysis framework for automated three-dimensional cell segmentation in large-scale …

Comparative performance analysis of Intel (R) Xeon Phi (TM), GPU, and CPU: a case study from microscopy image analysis

G Teodoro, T Kurc, J Kong, L Cooper… - 2014 IEEE 28th …, 2014 - ieeexplore.ieee.org
We study and characterize the performance of operations in an important class of
applications on GPUs and Many Integrated Core (MIC) architectures. Our work is motivated …

An intelligent cloud-based data processing broker for mobile e-health multimedia applications

SVB Peddi, P Kuhad, A Yassine, P Pouladzadeh… - Future Generation …, 2017 - Elsevier
Mobile e-health applications provide users and healthcare practitioners with an insightful
way to check users/patients' status and monitor their daily calorie intake. Mobile e-health …

Stochastic-based robust dynamic resource allocation for independent tasks in a heterogeneous computing system

MA Salehi, J Smith, AA Maciejewski, HJ Siegel… - Journal of Parallel and …, 2016 - Elsevier
Heterogeneous parallel and distributed computing systems frequently must operate in
environments where there is uncertainty in system parameters. Robustness can be defined …

Learning-driven interference-aware workload parallelization for streaming applications in heterogeneous cluster

H Zhang, X Geng, H Ma - IEEE Transactions on Parallel and …, 2020 - ieeexplore.ieee.org
In the past few years, with the rapid development of CPU-GPU heterogeneous computing,
the issue of task scheduling in the heterogeneous cluster has attracted a great deal of …

Gaia scheduler: A kubernetes-based scheduler framework

S Song, L Deng, J Gong, H Luo - … IEEE Intl Conf on Parallel & …, 2018 - ieeexplore.ieee.org
This paper proposed a topology-based GPU scheduling framework. The framework is based
on the traditional kubernetes GPU scheduling algorithm. In existing algorithms, GPU can …

OmniRPC: a Grid RPC system for parallel programming in cluster and Grid environment

M Sato, T Boku, D Takahashi - CCGrid 2003. 3rd IEEE/ACM …, 2003 - ieeexplore.ieee.org
We have designed and implemented a Grid RPC system called OmniRPC, for parallel
programming in cluster and grid environments. While OmniRPC inherits its API from Ninf, the …

Efficient irregular wavefront propagation algorithms on hybrid CPU–GPU machines

G Teodoro, T Pan, TM Kurc, J Kong, LAD Cooper… - Parallel computing, 2013 - Elsevier
We address the problem of efficient execution of a computation pattern, referred to here as
the irregular wavefront propagation pattern (IWPP), on hybrid systems with multiple CPUs …

Approximate similarity search for online multimedia services on distributed CPU–GPU platforms

G Teodoro, E Valle, N Mariano, R Torres, W Meira… - The VLDB Journal, 2014 - Springer
Similarity search in high-dimensional spaces is a pivotal operation for several database
applications, including online content-based multimedia services. With the increasing …

Scalable analysis of Big pathology image data cohorts using efficient methods and high-performance computing strategies

T Kurc, X Qi, D Wang, F Wang, G Teodoro, L Cooper… - BMC …, 2015 - Springer
Background We describe a suite of tools and methods that form a core set of capabilities for
researchers and clinical investigators to evaluate multiple analytical pipelines and quantify …