Size-dependent increase in RNA polymerase II initiation rates mediates gene expression scaling with cell size

XM Sun, A Bowman, M Priestman, F Bertaux… - Current Biology, 2020 - cell.com
Cell size varies during the cell cycle and in response to external stimuli. This requires the
tight coordination, or" scaling," of mRNA and protein quantities with the cell volume in order …

Coordination of gene expression noise with cell size: analytical results for agent-based models of growing cell populations

P Thomas, V Shahrezaei - Journal of the Royal Society …, 2021 - royalsocietypublishing.org
The chemical master equation and the Gillespie algorithm are widely used to model the
reaction kinetics inside living cells. It is thereby assumed that cell growth and division can be …

Modelling genetic stability in engineered cell populations

D Ingram, GB Stan - nature communications, 2023 - nature.com
Predicting the evolution of engineered cell populations is a highly sought-after goal in
biotechnology. While models of evolutionary dynamics are far from new, their application to …

Stochastic chemical kinetics of cell fate decision systems: From single cells to populations and back

J Ruess, G Ballif, C Aditya - The Journal of Chemical Physics, 2023 - pubs.aip.org
Stochastic chemical kinetics is a widely used formalism for studying stochasticity of chemical
reactions inside single cells. Experimental studies of reaction networks are generally …

When synthetic biology fails: a modular framework for modelling genetic stability in engineered cell populations

D Ingram, GB Stan - bioRxiv, 2022 - biorxiv.org
Predicting the evolution of engineered cell populations is a highly sought-after goal in
biotechnology with the potential to transform our use of genetic devices. While models of …

Phenotypic selection through cell death: stochastic modelling of o-6-methylguanine-dna methyltransferase dynamics

A Lasri, V Juric, M Verreault, F Bielle… - Royal Society …, 2020 - royalsocietypublishing.org
Glioblastoma (GBM) is the most aggressive malignant primary brain tumour with a median
overall survival of 15 months. To treat GBM, patients currently undergo a surgical resection …

[PDF][PDF] Coordination of Gene Expression Noise with Cell Size: Extrinsic Noise versus Agent-Based Models of Growing Cell Populations

P Thomas, V Shahrezaei - scholar.archive.org
The chemical master equation and the stochastic simulation algorithm are widely used to
model the reaction kinetics inside living cells. It is thereby assumed that cell growth and …