Linking discoveries, mechanisms, and technologies to develop a clearer perspective on plant long noncoding RNAs
Long noncoding RNAs (lncRNAs) are a large and diverse class of genes in eukaryotic
genomes that contribute to a variety of regulatory processes. Functionally characterized …
genomes that contribute to a variety of regulatory processes. Functionally characterized …
Origin and evolution of the octoploid strawberry genome
Cultivated strawberry emerged from the hybridization of two wild octoploid species, both
descendants from the merger of four diploid progenitor species into a single nucleus more …
descendants from the merger of four diploid progenitor species into a single nucleus more …
Biogenesis, functions, interactions, and resources of non-coding RNAs in plants
Plant transcriptomes encompass a large number of functional non-coding RNAs (ncRNAs),
only some of which have protein-coding capacity. Since their initial discovery, ncRNAs have …
only some of which have protein-coding capacity. Since their initial discovery, ncRNAs have …
Identification and functional annotation of long intergenic non-coding RNAs in Brassicaceae
Long intergenic noncoding RNAs (lincRNAs) are a large yet enigmatic class of eukaryotic
transcripts that can have critical biological functions. The wealth of RNA-sequencing (RNA …
transcripts that can have critical biological functions. The wealth of RNA-sequencing (RNA …
The genome of Cucurbita argyrosperma (silver-seed gourd) reveals faster rates of protein-coding gene and long noncoding RNA turnover and neofunctionalization …
Whole-genome duplications are an important source of evolutionary novelties that change
the mode and tempo at which genetic elements evolve within a genome. The Cucurbita …
the mode and tempo at which genetic elements evolve within a genome. The Cucurbita …
Transcription factors KANADI 1, MYB DOMAIN PROTEIN 44, and PHYTOCHROME INTERACTING FACTOR 4 regulate long intergenic noncoding RNAs expressed in …
L Liu, M Heidecker, T Depuydt… - Plant …, 2023 - academic.oup.com
Thousands of long intergenic noncoding RNAs (lincRNAs) have been identified in plant
genomes. While some lincRNAs have been characterized as important regulators in …
genomes. While some lincRNAs have been characterized as important regulators in …
Population-level annotation of lncRNAs in Arabidopsis reveals extensive expression variation associated with transposable element–like silencing
AE Kornienko, V Nizhynska, A Molla Morales… - The Plant …, 2024 - academic.oup.com
Long noncoding RNAs (lncRNAs) are understudied and underannotated in plants. In
mammals, lncRNA loci are nearly as ubiquitous as protein-coding genes, and their …
mammals, lncRNA loci are nearly as ubiquitous as protein-coding genes, and their …
Evolutionary origins of pseudogenes and their association with regulatory sequences in plants
J Xie, Y Li, X Liu, Y Zhao, B Li, PK Ingvarsson… - The Plant …, 2019 - academic.oup.com
Pseudogenes (Ψs), nonfunctional relatives of functional genes, form by duplication or
retrotransposition, and loss of gene function by disabling mutations. Evolutionary analysis …
retrotransposition, and loss of gene function by disabling mutations. Evolutionary analysis …
Multi-omics approaches to study long non-coding RNA function in atherosclerosis
AW Turner, D Wong, MD Khan… - Frontiers in …, 2019 - frontiersin.org
Atherosclerosis is a complex inflammatory disease of the vessel wall involving the interplay
of multiple cell types including vascular smooth muscle cells, endothelial cells, and …
of multiple cell types including vascular smooth muscle cells, endothelial cells, and …
Genome-wide identification of antisense lncRNAs and their association with susceptibility to Flavobacterium psychrophilum in rainbow trout
Eukaryotic genomes encode long noncoding natural antisense transcripts (lncNATs) that
have been increasingly recognized as regulatory members of gene expression. Recently …
have been increasingly recognized as regulatory members of gene expression. Recently …