A guide for the diagnosis of rare and undiagnosed disease: beyond the exome

S Marwaha, JW Knowles, EA Ashley - Genome medicine, 2022 - Springer
Rare diseases affect 30 million people in the USA and more than 300–400 million
worldwide, often causing chronic illness, disability, and premature death. Traditional …

Best practices for the interpretation and reporting of clinical whole genome sequencing

CA Austin-Tse, V Jobanputra, DL Perry, D Bick… - NPJ genomic …, 2022 - nature.com
Whole genome sequencing (WGS) shows promise as a first-tier diagnostic test for patients
with rare genetic disorders. However, standards addressing the definition and deployment …

Deep structured learning for variant prioritization in Mendelian diseases

MC Danzi, MF Dohrn, S Fazal, D Beijer… - Nature …, 2023 - nature.com
Effective computer-aided or automated variant evaluations for monogenic diseases will
expedite clinical diagnostic and research efforts of known and novel disease-causing genes …

The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species

TE Putman, K Schaper, N Matentzoglu… - Nucleic acids …, 2024 - academic.oup.com
Bridging the gap between genetic variations, environmental determinants, and phenotypic
outcomes is critical for supporting clinical diagnosis and understanding mechanisms of …

[HTML][HTML] Genomic answers for children: Dynamic analyses of> 1000 pediatric rare disease genomes

ASA Cohen, EG Farrow, AT Abdelmoity, JT Alaimo… - Genetics in …, 2022 - Elsevier
Purpose This study aimed to provide comprehensive diagnostic and candidate analyses in a
pediatric rare disease cohort through the Genomic Answers for Kids program. Methods …

Artificial intelligence enables comprehensive genome interpretation and nomination of candidate diagnoses for rare genetic diseases

FM De La Vega, S Chowdhury, B Moore, E Frise… - Genome Medicine, 2021 - Springer
Background Clinical interpretation of genetic variants in the context of the patient's
phenotype is becoming the largest component of cost and time expenditure for genome …

Evaluation of phenotype-driven gene prioritization methods for Mendelian diseases

X Yuan, J Wang, B Dai, Y Sun, K Zhang… - Briefings in …, 2022 - academic.oup.com
It's challenging work to identify disease-causing genes from the next-generation sequencing
(NGS) data of patients with Mendelian disorders. To improve this situation, researchers have …

Phenotype-aware prioritisation of rare Mendelian disease variants

C Kelly, A Szabo, N Pontikos, G Arno, PN Robinson… - Trends in Genetics, 2022 - cell.com
A molecular diagnosis from the analysis of sequencing data in rare Mendelian diseases has
a huge impact on the management of patients and their families. Numerous patient …

Rapid genomic sequencing for genetic disease diagnosis and therapy in intensive care units: a review

SF Kingsmore, R Nofsinger, K Ellsworth - NPJ Genomic Medicine, 2024 - nature.com
Single locus (Mendelian) diseases are a leading cause of childhood hospitalization,
intensive care unit (ICU) admission, mortality, and healthcare cost. Rapid genome …

Exploration of tools for the interpretation of human non-coding variants

N Tabarini, E Biagi, P Uva, E Iovino, T Pippucci… - International Journal of …, 2022 - mdpi.com
The advent of Whole Genome Sequencing (WGS) broadened the genetic variation detection
range, revealing the presence of variants even in non-coding regions of the genome, which …