Multiplexed CRISPR technologies for gene editing and transcriptional regulation

NS McCarty, AE Graham, L Studená… - Nature …, 2020 - nature.com
Multiplexed CRISPR technologies, in which numerous gRNAs or Cas enzymes are
expressed at once, have facilitated powerful biological engineering applications, vastly …

A user's guide to golden gate cloning methods and standards

JE Bird, J Marles-Wright, A Giachino - ACS Synthetic Biology, 2022 - ACS Publications
The continual demand for specialized molecular cloning techniques that suit a broad range
of applications has driven the development of many different cloning strategies. One method …

Inducible expression of large gRNA arrays for multiplexed CRISPRai applications

WM Shaw, L Studená, K Roy, P Hapeta… - Nature …, 2022 - nature.com
CRISPR gene activation and inhibition (CRISPRai) has become a powerful synthetic tool for
influencing the expression of native genes for foundational studies, cellular reprograming …

Synthetic DNA assembly using golden gate cloning and the hierarchical modular cloning pipeline

S Marillonnet, R Grützner - Current protocols in molecular …, 2020 - Wiley Online Library
Methods that enable the construction of recombinant DNA molecules are essential tools for
biological research and biotechnology. Golden Gate cloning is used for assembly of multiple …

[HTML][HTML] New synthetic biology tools for metabolic control

X Lv, A Hueso-Gil, X Bi, Y Wu, Y Liu, L Liu… - Current Opinion in …, 2022 - Elsevier
In industrial bioprocesses, microbial metabolism dictates the product yields, and therefore,
our capacity to control it has an enormous potential to help us move towards a bio-based …

Multiplex genome editing to construct cellulase engineered Saccharomyces cerevisiae for ethanol production from cellulosic biomass

Y Dixit, P Yadav, AK Sharma, P Pandey… - … and Sustainable Energy …, 2023 - Elsevier
The production of biofuels from cellulosic biomass has emerged as an appealing alternative
to fossil fuels. However, the recalcitrance of cellulose poses a challenge to converting it into …

Targeted In Vivo Mutagenesis in Yeast Using CRISPR/Cas9 and Hyperactive Cytidine and Adenine Deaminases

C Skrekas, A Limeta, V Siewers, F David - ACS Synthetic Biology, 2023 - ACS Publications
Directed evolution is a preferred strategy to improve the function of proteins such as
enzymes that act as bottlenecks in metabolic pathways. Common directed evolution …

Multiplex genome editing in yeast by CRISPR/Cas9–a potent and agile tool to reconstruct complex metabolic pathways

JC Utomo, CL Hodgins, DK Ro - Frontiers in Plant Science, 2021 - frontiersin.org
Numerous important pharmaceuticals and nutraceuticals originate from plant specialized
metabolites, most of which are synthesized via complex biosynthetic pathways. The …

Expansion of the yeast modular cloning toolkit for CRISPR-based applications, genomic integrations and combinatorial libraries

M Otto, C Skrekas, M Gossing, J Gustafsson… - ACS synthetic …, 2021 - ACS Publications
Standardisation of genetic parts has become a topic of increasing interest over the last
decades. The promise of simplifying molecular cloning procedures, while at the same time …

Design principles for synthetic control systems to engineer plants

T Bull, A Khakhar - Plant Cell Reports, 2023 - Springer
Key message Synthetic control systems have led to significant advancement in the study
and engineering of unicellular organisms, but it has been challenging to apply these tools to …