[HTML][HTML] Nanopore sequencing technology, bioinformatics and applications

Y Wang, Y Zhao, A Bollas, Y Wang, KF Au - Nature biotechnology, 2021 - nature.com
Rapid advances in nanopore technologies for sequencing single long DNA and RNA
molecules have led to substantial improvements in accuracy, read length and throughput …

The application of long-read sequencing in clinical settings

JB Oehler, H Wright, Z Stark, AJ Mallett, U Schmitz - Human genomics, 2023 - Springer
Long-read DNA sequencing technologies have been rapidly evolving in recent years, and
their ability to assess large and complex regions of the genome makes them ideal for clinical …

Recent advances in cancer fusion transcript detection

R Dorney, BP Dhungel, JEJ Rasko… - Briefings in …, 2023 - academic.oup.com
Extensive investigation of gene fusions in cancer has led to the discovery of novel
biomarkers and therapeutic targets. To date, most studies have neglected chromosomal …

Identification of cell barcodes from long-read single-cell RNA-seq with BLAZE

Y You, YDJ Prawer, R De Paoli-Iseppi, CPJ Hunt… - Genome Biology, 2023 - Springer
Long-read single-cell RNA sequencing (scRNA-seq) enables the quantification of RNA
isoforms in individual cells. However, long-read scRNA-seq using the Oxford Nanopore …

TAGET: a toolkit for analyzing full-length transcripts from long-read sequencing

Y Xia, Z Jin, C Zhang, L Ouyang, Y Dong, J Li… - Nature …, 2023 - nature.com
Abstract Single-molecule Real-time Isoform Sequencing (Iso-seq) of transcriptomes by
PacBio can generate very long and accurate reads, thus providing an ideal platform for full …

Comprehensive analysis of full-length transcripts reveals novel splicing abnormalities and oncogenic transcripts in liver cancer

H Kiyose, H Nakagawa, A Ono, H Aikata, M Ueno… - PLoS …, 2022 - journals.plos.org
Genes generate transcripts of various functions by alternative splicing. However, in most
transcriptome studies, short-reads sequencing technologies (next-generation sequencers) …

Transcriptome profiling for precision cancer medicine using shallow nanopore cDNA sequencing

A Mock, M Braun, C Scholl, S Fröhling, C Erkut - Scientific Reports, 2023 - nature.com
Transcriptome profiling is a mainstay of translational cancer research and is increasingly
finding its way into precision oncology. While bulk RNA sequencing (RNA-seq) is widely …

Long-read RNA sequencing: a transformative technology for exploring transcriptome complexity in human diseases

IH Ament, N DeBruyne, F Wang, L Lin - Molecular Therapy, 2024 - cell.com
Long-read RNA sequencing (RNA-seq) is emerging as a powerful and versatile technology
for studying human transcriptomes. By enabling the end-to-end sequencing of full-length …

Gene fusion detection and characterization in long-read cancer transcriptome sequencing data with FusionSeeker

Y Chen, Y Wang, W Chen, Z Tan, Y Song… - Cancer research, 2023 - AACR
Gene fusions are prevalent in a wide array of cancer types with different frequencies. Long-
read transcriptome sequencing technologies, such as PacBio, Iso-Seq, and Nanopore direct …

[HTML][HTML] Single-cell and long-read sequencing to enhance modelling of splicing and cell-fate determination

S Wu, U Schmitz - Computational and Structural Biotechnology Journal, 2023 - Elsevier
Single-cell sequencing technologies have revolutionised the life sciences and biomedical
research. Single-cell sequencing provides high-resolution data on cell heterogeneity …