Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review

P Csermely, T Korcsmáros, HJM Kiss, G London… - Pharmacology & …, 2013 - Elsevier
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …

A renaissance of neural networks in drug discovery

II Baskin, D Winkler, IV Tetko - Expert opinion on drug discovery, 2016 - Taylor & Francis
Introduction: Neural networks are becoming a very popular method for solving machine
learning and artificial intelligence problems. The variety of neural network types and their …

Accurate prediction of potential druggable proteins based on genetic algorithm and Bagging-SVM ensemble classifier

J Lin, H Chen, S Li, Y Liu, X Li, B Yu - Artificial intelligence in medicine, 2019 - Elsevier
Discovering and accurately locating drug targets is of great significance for the research and
development of new drugs. As a different approach to traditional drug development, the …

Chemometrics tools in QSAR/QSPR studies: A historical perspective

S Yousefinejad, B Hemmateenejad - Chemometrics and Intelligent …, 2015 - Elsevier
One of the most extended subfields of chemometrics, at least by considering the number of
publications and interested researchers, is QSAR/QSPR. During the time, various improved …

Toxic colors: the use of deep learning for predicting toxicity of compounds merely from their graphic images

M Fernandez, F Ban, G Woo, M Hsing… - Journal of chemical …, 2018 - ACS Publications
The majority of computational methods for predicting toxicity of chemicals are typically based
on “nonmechanistic” cheminformatics solutions, relying on an arsenal of QSAR descriptors …

Computational models for human and animal hepatotoxicity with a global application scope

D Mulliner, F Schmidt, M Stolte, HP Spirkl… - Chemical Research …, 2016 - ACS Publications
Hepatic toxicity is a key concern for novel pharmaceutical drugs since it is difficult to
anticipate in preclinical models, and it can originate from pharmacologically unrelated drug …

Genome-wide enhancer prediction from epigenetic signatures using genetic algorithm-optimized support vector machines

M Fernandez, D Miranda-Saavedra - Nucleic acids research, 2012 - academic.oup.com
The chemical modification of histones at specific DNA regulatory elements is linked to the
activation, inactivation and poising of genes. A number of tools exist to predict enhancers …

[HTML][HTML] Structure-based molecular modeling in SAR analysis and lead optimization

V Temml, Z Kutil - Computational and structural biotechnology journal, 2021 - Elsevier
In silico methods like molecular docking and pharmacophore modeling are established
strategies in lead identification. Their successful application for finding new active molecules …

Comprehension of drug toxicity: software and databases

AA Toropov, AP Toropova, I Raska Jr… - Computers in biology …, 2014 - Elsevier
Quantitative structure–property/activity relationships (QSPRs/QSARs) are a tool (in silico) to
rapidly predict various endpoints in general, and drug toxicity in particular. However, this …

Genetic algorithms, a nature-inspired tool: a survey of applications in materials science and related fields: part II

W Paszkowicz - Materials and Manufacturing Processes, 2013 - Taylor & Francis
Genetic algorithms (GAs) are a helpful tool in optimization, simulation, modelling, design,
and prediction purposes in various domains of science including materials science …