Mechanisms regulating zygotic genome activation

KN Schulz, MM Harrison - Nature Reviews Genetics, 2019 - nature.com
Following fertilization, the two specified gametes must unite to create an entirely new
organism. The genome is initially transcriptionally quiescent, allowing the zygote to be …

Structure, dynamics, assembly, and evolution of protein complexes

JA Marsh, SA Teichmann - Annual review of biochemistry, 2015 - annualreviews.org
The assembly of individual proteins into functional complexes is fundamental to nearly all
biological processes. In recent decades, many thousands of homomeric and heteromeric …

PLIP 2021: Expanding the scope of the protein–ligand interaction profiler to DNA and RNA

MF Adasme, KL Linnemann, SN Bolz… - Nucleic acids …, 2021 - academic.oup.com
With the growth of protein structure data, the analysis of molecular interactions between
ligands and their target molecules is gaining importance. PLIP, the protein–ligand …

[HTML][HTML] U1 snRNP increases RNA Pol II elongation rate to enable synthesis of long genes

CA Mimoso, K Adelman - Molecular cell, 2023 - cell.com
The expansion of introns within mammalian genomes poses a challenge for the production
of full-length messenger RNAs (mRNAs), with increasing evidence that these long AT-rich …

[HTML][HTML] The role of chromatin during transcription

B Li, M Carey, JL Workman - Cell, 2007 - cell.com
Chromatin structure imposes significant obstacles on all aspects of transcription that are
mediated by RNA polymerase II. The dynamics of chromatin structure are tightly regulated …

Genome-wide structure and organization of eukaryotic pre-initiation complexes

HS Rhee, BF Pugh - Nature, 2012 - nature.com
Transcription and regulation of genes originate from transcription pre-initiation complexes
(PICs). Their structural and positional organization across eukaryotic genomes is unknown …

High-resolution mapping of RNA-binding regions in the nuclear proteome of embryonic stem cells

C He, S Sidoli, R Warneford-Thomson, DC Tatomer… - Molecular cell, 2016 - cell.com
Interactions between noncoding RNAs and chromatin proteins play important roles in gene
regulation, but the molecular details of most of these interactions are unknown. Using …

Transcriptional regulatory elements in the human genome

GA Maston, SK Evans, MR Green - Annu. Rev. Genomics Hum …, 2006 - annualreviews.org
The faithful execution of biological processes requires a precise and carefully orchestrated
set of steps that depend on the proper spatial and temporal expression of genes. Here we …

The Mediator complex and transcription regulation

ZC Poss, CC Ebmeier, DJ Taatjes - Critical reviews in biochemistry …, 2013 - Taylor & Francis
The Mediator complex is a multi-subunit assembly that appears to be required for regulating
expression of most RNA polymerase II (pol II) transcripts, which include protein-coding and …

The African swine fever virus transcriptome

G Cackett, D Matelska, M Sýkora, R Portugal… - Journal of …, 2020 - Am Soc Microbiol
African swine fever virus (ASFV) causes hemorrhagic fever in domestic pigs, presenting the
biggest global threat to animal farming in recorded history. Despite the importance of ASFV …