[HTML][HTML] Origins and evolution of viruses of eukaryotes: The ultimate modularity
Viruses and other selfish genetic elements are dominant entities in the biosphere, with
respect to both physical abundance and genetic diversity. Various selfish elements …
respect to both physical abundance and genetic diversity. Various selfish elements …
Mobile bacterial group II introns at the crux of eukaryotic evolution
AM Lambowitz, M Belfort - Mobile DNA III, 2015 - Wiley Online Library
Group II introns are remarkable mobile retroelements that use the combined activities of an
autocatalytic RNA and an intron‐encoded reverse transcriptase (RT) to propagate efficiently …
autocatalytic RNA and an intron‐encoded reverse transcriptase (RT) to propagate efficiently …
Pan-3D genome analysis reveals structural and functional differentiation of soybean genomes
L Ni, Y Liu, X Ma, T Liu, X Yang, Z Wang, Q Liang, S Liu… - Genome Biology, 2023 - Springer
Background High-order chromatin structure plays important roles in gene regulation.
However, the diversity of the three-dimensional (3D) genome across plant accessions are …
However, the diversity of the three-dimensional (3D) genome across plant accessions are …
Using bioinformatic and phylogenetic approaches to classify transposable elements and understand their complex evolutionary histories
IR Arkhipova - Mobile DNA, 2017 - Springer
In recent years, much attention has been paid to comparative genomic studies of
transposable elements (TEs) and the ensuing problems of their identification, classification …
transposable elements (TEs) and the ensuing problems of their identification, classification …
Evolving together: Cassandra retrotransposons gradually mirror promoter mutations of the 5S rRNA genes
The 5S rRNA genes are among the most conserved nucleotide sequences across all
species. Similar to the 5S preservation we observe the occurrence of 5S-related …
species. Similar to the 5S preservation we observe the occurrence of 5S-related …
LINEs between species: evolutionary dynamics of LINE-1 retrotransposons across the eukaryotic tree of life
LINE-1 (L1) retrotransposons are dynamic elements. They have the potential to cause great
genomic change because of their ability to 'jump'around the genome and amplify …
genomic change because of their ability to 'jump'around the genome and amplify …
Phase separation of the LINE-1 ORF1 protein is mediated by the N-terminus and coiled-coil domain
Long interspersed nuclear element-1 (L1) is a retrotransposable element that autonomously
replicates in the human genome, resulting in DNA damage and genomic instability …
replicates in the human genome, resulting in DNA damage and genomic instability …
Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons
A de Mendoza, A Bonnet, DB Vargas-Landin… - Nature …, 2018 - nature.com
Transposable elements are in a constant arms race with the silencing mechanisms of their
host genomes. One silencing mechanism commonly used by many eukaryotes is dependent …
host genomes. One silencing mechanism commonly used by many eukaryotes is dependent …
Genome-wide identification of Reverse Transcriptase domains of recently inserted endogenous plant pararetrovirus (Caulimoviridae)
C De Tomás, CM Vicient - Frontiers in plant science, 2022 - frontiersin.org
Endogenous viral elements (EVEs) are viral sequences that have been integrated into the
nuclear chromosomes. Endogenous pararetrovirus (EPRV) are a class of EVEs derived from …
nuclear chromosomes. Endogenous pararetrovirus (EPRV) are a class of EVEs derived from …
Broken, silent, and in hiding: tamed endogenous pararetroviruses escape elimination from the genome of sugar beet (Beta vulgaris)
Abstract Background and Aims Endogenous pararetroviruses (EPRVs) are widespread
components of plant genomes that originated from episomal DNA viruses of the …
components of plant genomes that originated from episomal DNA viruses of the …